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MeasurementSet
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Assay
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in vitro CRISPR screen using flow cytometry
41
Preferred Assay Title
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None
Variant-EFFECTS
41
Control Type
All
None
unsorted FACS input
8
untransfected
1
Construct Library Data
All
None
guide library
40
Readout Genes
All
None
PPIF
32
Sequencing Platform
All
None
Illumina NextSeq 550
41
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/analysis-sets/IGVFDS4359OODY/
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Taxa
UUID
/measurement-sets/IGVFDS4363PDBQ/
IGVFDS4363PDBQ
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7022AZSZ/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fe739718-a398-4e5c-b7b5-4d95497c90ad
/measurement-sets/IGVFDS5128CXIS/
IGVFDS5128CXIS
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3211UEWZ/
released
untransfected prime editing Variant-EFFECTS
Homo sapiens
fb47792f-c0be-488b-84bd-c23a65c154a1
/measurement-sets/IGVFDS9880SAMJ/
IGVFDS9880SAMJ
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0425HXKG/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fa80915b-6ed1-4719-95bc-30b16118a77f
/measurement-sets/IGVFDS5795QOPU/
IGVFDS5795QOPU
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1676ETUI/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f8867dee-4d9c-4714-b3a2-53ab6e170b93
/measurement-sets/IGVFDS3292ERTL/
IGVFDS3292ERTL
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8589BNCG/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f637cecf-f002-49cd-bdac-8a03a123ffac
/measurement-sets/IGVFDS3765SWWC/
IGVFDS3765SWWC
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM2557IAGR/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
e950d39b-28cd-4837-bea2-add0e6ce5e5c
/measurement-sets/IGVFDS2247EEVD/
IGVFDS2247EEVD
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1406ICND/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
e064e18d-e803-48c9-b019-0cc8652bdec9
/measurement-sets/IGVFDS9275AQHE/
IGVFDS9275AQHE
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinD_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM5208LYWU/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
d364b8aa-3a26-4cd5-a7e8-6e57772cafb1
/measurement-sets/IGVFDS5338RAZZ/
IGVFDS5338RAZZ
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3864UXYU/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
cfcf5597-a68e-4cce-969c-5e1581dd786e
/measurement-sets/IGVFDS7378QBUS/
IGVFDS7378QBUS
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3068WOLM/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
ceb5121c-a52d-40b1-b168-ef5578a2da08
/measurement-sets/IGVFDS4825MNUM/
IGVFDS4825MNUM
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM5533UPOD/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
c7919e5e-ad18-4c59-9942-263f063c2912
/measurement-sets/IGVFDS8933DNXM/
IGVFDS8933DNXM
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM4794HUBP/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
bfd8e3ec-98a2-476f-a0f0-bb2426717803
/measurement-sets/IGVFDS3326NVFS/
IGVFDS3326NVFS
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep4-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM6196LFWY/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
bb8e5f27-797d-49cc-9c1b-63ddd4f1c4be
/measurement-sets/IGVFDS4607VBYI/
IGVFDS4607VBYI
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8654CBKP/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
b75addc9-5b0d-4bea-adb8-9476f29c7ecb
/measurement-sets/IGVFDS4141QOFR/
IGVFDS4141QOFR
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0259SMPF/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
b19678ee-d555-4a83-a8fd-f45cc4ab7c16
/measurement-sets/IGVFDS2940LDCT/
IGVFDS2940LDCT
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3122QCVP/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
abc8f6d3-0418-497a-83a9-8b2dd2b31396
/measurement-sets/IGVFDS0649NZHX/
IGVFDS0649NZHX
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM6784MZOT/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
a2463aed-33e7-4921-ab0f-f8782a40144c
/measurement-sets/IGVFDS7100AAFY/
IGVFDS7100AAFY
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM5250NIMK/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
9976d83a-b3a4-4e75-ac13-5b7ff44a7c38
/measurement-sets/IGVFDS4188FAAP/
IGVFDS4188FAAP
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep4-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM2170CHPM/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
98882200-b667-4b42-8e1e-cda951f87b60
/measurement-sets/IGVFDS2337XGGI/
IGVFDS2337XGGI
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep1-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0390WQRT/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
987ed580-9483-4a2e-ab91-ee30d3d9bb92
/measurement-sets/IGVFDS6957VHOD/
IGVFDS6957VHOD
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinD_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0117NVHQ/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
8c99a469-d50c-428c-bce5-e48843c5d636
/measurement-sets/IGVFDS6384OLQB/
IGVFDS6384OLQB
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep3-BinD_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7963WTMN/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
8b72cac0-220b-4b8f-9f1f-09aa210620ff
/measurement-sets/IGVFDS0872DEIB/
IGVFDS0872DEIB
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3467IDCX/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
8064e61f-7098-4f50-bf5b-db46f383702c
/measurement-sets/IGVFDS3508UNRE/
IGVFDS3508UNRE
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1225BLTJ/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
766fa2c0-becc-4e7c-b726-be511e9ce86d
/measurement-sets/IGVFDS8499AVHV/
IGVFDS8499AVHV
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep1-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM6600KXOT/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
6d0e8cd7-046e-46e9-beca-aaff7c25dd6f