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Taxa
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Homo sapiens
549
Mus musculus
58
Classifications
All
None
cell line
549
differentiated cell specimen
48
multiplexed sample
10
Sample Term
All
None
THP-1
201
HCT116
160
Jurkat
140
TeloHAEC
48
mouse embryonic stem cell
48
left cerebral cortex
10
Targeted Sample Term
All
None
embryoid body
48
25 Items
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607 items
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Assay Targeted Genes
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Lab
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Preferred Assay Title
Protocols
Samples
Sequencing Library Types
Status
Summary
Taxa
UUID
/measurement-sets/IGVFDS6647HVMC/
IGVFDS6647HVMC
jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinB_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8601WYGY/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
feb7d08a-1287-4cac-b362-f81fd5ba1f81
/measurement-sets/IGVFDS4363PDBQ/
IGVFDS4363PDBQ
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7022AZSZ/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fe739718-a398-4e5c-b7b5-4d95497c90ad
/measurement-sets/IGVFDS2419JZMR/
IGVFDS2419JZMR
jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep4_bin4
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO3459DFTW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM5826EWDE/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus
Homo sapiens
fe738818-a459-4367-8223-af72aa6bca96
/measurement-sets/IGVFDS4736IKQS/
IGVFDS4736IKQS
jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0906STHP/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fe6d143f-dbd2-40a5-b72b-55021f81951f
/measurement-sets/IGVFDS5041NPBP/
IGVFDS5041NPBP
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR1_S42
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR2_S48
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR3_S138
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR4_S144
KITLG
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM1131LTFK/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fe1a8271-fd7e-454e-ae2c-187f1d46d77d
/measurement-sets/IGVFDS5601DSMT/
IGVFDS5601DSMT
jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinB_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1683OFWB/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fd6e5d84-173b-4f03-8de0-67bbec8d433f
/measurement-sets/IGVFDS8710ZSOZ/
IGVFDS8710ZSOZ
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR1_S63
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR2_S69
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR3_S159
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR4_S165
KITLG
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM7299CMAO/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fcaeb9d7-e1f4-4136-9ce7-e43a1f35ee3c
/measurement-sets/IGVFDS7147ANAC/
IGVFDS7147ANAC
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR1_S14
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR2_S20
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR3_S110
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR4_S116
KITLG
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM3263KXLP/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fc9ab042-6677-4c24-9a08-261355a7f363
/measurement-sets/IGVFDS0885VFHW/
IGVFDS0885VFHW
jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM3546ITTD/
released
massively parallel reporter assay
Mus musculus
fb95a9da-2dd1-4f85-b7b7-4604eea3838f
/measurement-sets/IGVFDS3899ANMJ/
IGVFDS3899ANMJ
jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinF_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1757XEWZ/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fb676008-1191-4fbf-b590-6e868e8a197f
/measurement-sets/IGVFDS5128CXIS/
IGVFDS5128CXIS
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3211UEWZ/
released
cas mediated mutagenesis (Variant FlowFISH)
Homo sapiens
fb47792f-c0be-488b-84bd-c23a65c154a1
/measurement-sets/IGVFDS9738RCWL/
IGVFDS9738RCWL
jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8638GWPD/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fb30f5f3-a7fc-435a-8ec3-890a56d9703f
/measurement-sets/IGVFDS9880SAMJ/
IGVFDS9880SAMJ
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0425HXKG/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fa80915b-6ed1-4719-95bc-30b16118a77f
/measurement-sets/IGVFDS1261RWQY/
IGVFDS1261RWQY
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR1-Rep1_S29
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR2-Rep1_S35
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR3-Rep1_S83
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR4-Rep1_S89
ITPRID2
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM9082URPW/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f94bbd36-f814-4589-b13f-86cab3019eec
/measurement-sets/IGVFDS1564ZVKC/
IGVFDS1564ZVKC
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR1_Rep1_S140
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR1_Rep2_S195
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR2_Rep1_S146
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR2_Rep2_S201
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR3_Rep1_S152
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR3_Rep2_S207
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR4_Rep1_S158
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR4_Rep2_S213
MYC
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM3012RMVA/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f9389ff1-8452-43ea-a522-a576ab5fbe9e
/measurement-sets/IGVFDS5795QOPU/
IGVFDS5795QOPU
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1676ETUI/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f8867dee-4d9c-4714-b3a2-53ab6e170b93
/measurement-sets/IGVFDS9690GCYG/
IGVFDS9690GCYG
jesse-engreitz:measurement_NOS3_CRISPRi_FF_R2_FFrep1_binD_PCR1_S132
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO3459DFTW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0634QOST/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
Homo sapiens
f81db119-fd66-4221-9a50-eb2d4f1e86b4
/measurement-sets/IGVFDS6884MESW/
IGVFDS6884MESW
jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinC_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7935BTPN/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f7f1f2fc-675d-4e2b-818c-b1716303967b
/measurement-sets/IGVFDS6275PORW/
IGVFDS6275PORW
jesse-engreitz:measurement_NOS3_CRISPRi_FF_R2_FFrep1_binC_PCR1_S131
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO3459DFTW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3812UYWH/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
Homo sapiens
f7bcd880-6bee-4c66-a56a-92ae8018f796
/measurement-sets/IGVFDS1298BFAZ/
IGVFDS1298BFAZ
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR1_Rep1_S1
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR1_Rep2_S56
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR2_Rep1_S7
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR2_Rep2_S62
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR3_Rep1_S13
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR3_Rep2_S68
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR4_Rep1_S19
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR4_Rep2_S74
MYC
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM3086DQMC/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f64a8b0f-1c14-4e13-92af-a915aa8c8f7d
/measurement-sets/IGVFDS3292ERTL/
IGVFDS3292ERTL
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinA_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8589BNCG/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f637cecf-f002-49cd-bdac-8a03a123ffac
/measurement-sets/IGVFDS5488ZDOV/
IGVFDS5488ZDOV
jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM2682WCYF/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f5e52f05-55d5-4b34-b122-b0a68b71b1d6
/measurement-sets/IGVFDS9987GPMG/
IGVFDS9987GPMG
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin0hrs-FF2-BinA-PCR1-Rep1_S13
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin0hrs-FF2-BinA-PCR2-Rep1_S19
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin0hrs-FF2-BinA-PCR3-Rep1_S67
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin0hrs-FF2-BinA-PCR4-Rep1_S73
ITPRID2
/assay-terms/NTR_0000520/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM1725FTKZ/
released
CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
f576de74-9cd5-4e24-861a-a6546b3afc33
/measurement-sets/IGVFDS5733FUWG/
IGVFDS5733FUWG
jesse-engreitz:230807S022-THP1-P153-Amp_PPIF_promoter-BioRep1-FFrep3-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3818KKHR/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f486be14-7db1-405b-83b7-d2dde6643084
/measurement-sets/IGVFDS0563SROG/
IGVFDS0563SROG
jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing
/assay-terms/OBI_0003133/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant FlowFISH
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0564OGQD/
released
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f3c63fb5-0beb-49ff-a97b-76e393bc908e