IGVF

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM8601WYGY/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

feb7d08a-1287-4cac-b362-f81fd5ba1f81

/measurement-sets/IGVFDS4363PDBQ/

IGVFDS4363PDBQ

jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing

PPIF

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM7022AZSZ/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fe739718-a398-4e5c-b7b5-4d95497c90ad

/measurement-sets/IGVFDS2419JZMR/

IGVFDS2419JZMR

jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep4_bin4

/human-donors/IGVFDO3459DFTW/

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

CRISPR FlowFISH screen

/in-vitro-systems/IGVFSM5826EWDE/

released

CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus

Homo sapiens

fe738818-a459-4367-8223-af72aa6bca96

/measurement-sets/IGVFDS4736IKQS/

IGVFDS4736IKQS

jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-FACS_Input_AmpliconSequencing

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM0906STHP/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fe6d143f-dbd2-40a5-b72b-55021f81951f

/measurement-sets/IGVFDS3969UCCQ/

IGVFDS3969UCCQ

charles-gersbach:cd8-tcells-rna-seq-cas-ko-gata3-rep3

/assay-terms/OBI_0003090/

/awards/HG012053/

/human-donors/IGVFDO4048LCOU/

experimental data

/labs/charles-gersbach/

RNA-seq

https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1, https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6

/primary-cells/IGVFSM7117ATUZ/

released

knockout RNA-seq integrating a guide (sgRNA) library targeting transcription start sites in GATA3

Homo sapiens

fe29fcd6-36dd-4bba-acde-cc30fbb5ebc7

/measurement-sets/IGVFDS5041NPBP/

IGVFDS5041NPBP

jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR1_S42
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR2_S48
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR3_S138
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR4_S144

KITLG

experimental data

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

CRISPR FlowFISH screen

/in-vitro-systems/IGVFSM1131LTFK/

released

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fe1a8271-fd7e-454e-ae2c-187f1d46d77d

/measurement-sets/IGVFDS5601DSMT/

IGVFDS5601DSMT

jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinB_AmpliconSequencing

PPIF

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM1683OFWB/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fd6e5d84-173b-4f03-8de0-67bbec8d433f

/measurement-sets/IGVFDS2160ZTSJ/

IGVFDS2160ZTSJ

charles-gersbach:cd8-tcells-measurement-set-crispr-ko-tfome-batf3-over-high-bin-rep1

IL7R

/human-donors/IGVFDO8306NDTY/

/awards/HG012053/

experimental data

/labs/charles-gersbach/

CRISPR FACS screen

https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1

/primary-cells/IGVFSM8084QKPW/

released

CRISPR knockout FACS screen integrating a guide (sgRNA) library targeting transcription start sites in many genes

Homo sapiens

fd5cf966-33dd-44fe-a22a-8bde46de6152

/measurement-sets/IGVFDS8710ZSOZ/

IGVFDS8710ZSOZ

jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR1_S63
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR2_S69
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR3_S159
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR4_S165

KITLG

experimental data

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

CRISPR FlowFISH screen

/in-vitro-systems/IGVFSM7299CMAO/

released

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fcaeb9d7-e1f4-4136-9ce7-e43a1f35ee3c

/measurement-sets/IGVFDS7147ANAC/

IGVFDS7147ANAC

jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR1_S14
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR2_S20
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR3_S110
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR4_S116

KITLG

experimental data

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

CRISPR FlowFISH screen

/in-vitro-systems/IGVFSM3263KXLP/

released

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fc9ab042-6677-4c24-9a08-261355a7f363

/measurement-sets/IGVFDS0885VFHW/

IGVFDS0885VFHW

jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads

/assay-terms/OBI_0002675/

/awards/HG011966/

/rodent-donors/IGVFDO3898MNLZ/

experimental data

/labs/jay-shendure/

MPRA

https://www.protocols.io/file/n92rb7r27.pdf

/in-vitro-systems/IGVFSM3546ITTD/

released

MPRA integrating a reporter library targeting accessible genome regions in many genomic loci

Mus musculus

fb95a9da-2dd1-4f85-b7b7-4604eea3838f

/measurement-sets/IGVFDS3899ANMJ/

IGVFDS3899ANMJ

jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinF_AmpliconSequencing

PPIF

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM1757XEWZ/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fb676008-1191-4fbf-b590-6e868e8a197f

/measurement-sets/IGVFDS5128CXIS/

IGVFDS5128CXIS

jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM3211UEWZ/

released

prime editing Variant FlowFISH

Homo sapiens

fb47792f-c0be-488b-84bd-c23a65c154a1

/measurement-sets/IGVFDS9738RCWL/

IGVFDS9738RCWL

jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing

PPIF

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM8638GWPD/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fb30f5f3-a7fc-435a-8ec3-890a56d9703f

/measurement-sets/IGVFDS1619VKNB/

IGVFDS1619VKNB

charles-gersbach:cd8-tcells-atac-seq-acute-activation-batf3-rep1

/assay-terms/OBI_0003089/

/awards/HG012053/

/human-donors/IGVFDO9588OERW/

experimental data

/labs/charles-gersbach/

ATAC-seq

https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn

/primary-cells/IGVFSM0066TACG/

released

ATAC-seq integrating a expression vector library of BATF3

Homo sapiens

fac6ae1a-55ce-44cc-879c-2b167fb2ff8d

/measurement-sets/IGVFDS9880SAMJ/

IGVFDS9880SAMJ

jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing

PPIF

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM0425HXKG/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fa80915b-6ed1-4719-95bc-30b16118a77f

/measurement-sets/IGVFDS1261RWQY/

IGVFDS1261RWQY

jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR1-Rep1_S29
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR2-Rep1_S35
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR3-Rep1_S83
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR4-Rep1_S89

ITPRID2

experimental data

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

CRISPR FlowFISH screen

/in-vitro-systems/IGVFSM9082URPW/

released

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

f94bbd36-f814-4589-b13f-86cab3019eec

/measurement-sets/IGVFDS1564ZVKC/

IGVFDS1564ZVKC

jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR1_Rep1_S140
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR1_Rep2_S195
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR2_Rep1_S146
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR2_Rep2_S201
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR3_Rep1_S152
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR3_Rep2_S207
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR4_Rep1_S158
jesse-engreitz:measurement_CRUDO_MYC-Auxin6hrs-FF2-BinF-PCR4_Rep2_S213

MYC

experimental data

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

CRISPR FlowFISH screen

/in-vitro-systems/IGVFSM3012RMVA/

released

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

f9389ff1-8452-43ea-a522-a576ab5fbe9e

/measurement-sets/IGVFDS5795QOPU/

IGVFDS5795QOPU

jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing

PPIF

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM1676ETUI/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

f8867dee-4d9c-4714-b3a2-53ab6e170b93

/measurement-sets/IGVFDS9690GCYG/

IGVFDS9690GCYG

jesse-engreitz:measurement_NOS3_CRISPRi_FF_R2_FFrep1_binD_PCR1_S132

/human-donors/IGVFDO3459DFTW/

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

CRISPR FlowFISH screen

/in-vitro-systems/IGVFSM0634QOST/

released

CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3

Homo sapiens

f81db119-fd66-4221-9a50-eb2d4f1e86b4

/measurement-sets/IGVFDS6884MESW/

IGVFDS6884MESW

jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinC_AmpliconSequencing

PPIF

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM7935BTPN/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

f7f1f2fc-675d-4e2b-818c-b1716303967b

/measurement-sets/IGVFDS6275PORW/

IGVFDS6275PORW

jesse-engreitz:measurement_NOS3_CRISPRi_FF_R2_FFrep1_binC_PCR1_S131

/human-donors/IGVFDO3459DFTW/

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

CRISPR FlowFISH screen

/in-vitro-systems/IGVFSM3812UYWH/

released

CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3

Homo sapiens

f7bcd880-6bee-4c66-a56a-92ae8018f796

/measurement-sets/IGVFDS1298BFAZ/

IGVFDS1298BFAZ

jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR1_Rep1_S1
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR1_Rep2_S56
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR2_Rep1_S7
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR2_Rep2_S62
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR3_Rep1_S13
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR3_Rep2_S68
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR4_Rep1_S19
jesse-engreitz:measurement_CRUDO_MYC-Auxin0hrs-FF1-BinA-PCR4_Rep2_S74

MYC

experimental data

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

CRISPR FlowFISH screen

/in-vitro-systems/IGVFSM3086DQMC/

released

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

f64a8b0f-1c14-4e13-92af-a915aa8c8f7d

/measurement-sets/IGVFDS3292ERTL/

IGVFDS3292ERTL

jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep1-FFrep3-BinA_AmpliconSequencing

PPIF

experimental data

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Variant FlowFISH

/in-vitro-systems/IGVFSM8589BNCG/

released

prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

f637cecf-f002-49cd-bdac-8a03a123ffac

/measurement-sets/IGVFDS5488ZDOV/

IGVFDS5488ZDOV

jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing

PPIF

experimental data