IGVFDS2419JZMR

released

File Set Type

experimental data

Summary

CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus

Assay Term

CRISPR screen

Publication Identifiers

PMID:38326615

Sample Summaries

TeloHAEC cell line, female, Homo sapiens (sorting details: FACS bin for 76-100% expression of TLNRD1) modified with a guide library

Construct Library Sets

IGVFDS7621RRLM Guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus

Protocols

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

Aliases

jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep4_bin4

Publication Identifiers

PMID:38326615

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM5826EWDE

InVitroSystem

TeloHAEC

TeloHAEC cell line, female, Homo sapiens (sorting details: FACS bin for 76-100% expression of TLNRD1) modified with a guide library

Donors

1 item

Accession

Aliases

Sex

Taxa

IGVFDO3459DFTW

igvf:donor_of_teloHAEC

female

Homo sapiens

Auxiliary Datasets

1 item

Accession

Summary

Aliases

Lab

IGVFDS8749RHTV

gRNA sequencing for CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus

jesse-engreitz:auxiliary_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep4_bin4

Jesse Engreitz, Stanford

Attribution

Award

HG011972

Principal Investigator(s)

Anshul Kundaje, Jesse Engreitz, Marlene Rabinovitch, Lars Steinmetz, Michael Bassik, Thomas Quertermous, Will Greenleaf

Contact P.I.

Jesse Engreitz

Lab

Jesse Engreitz, Stanford