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INDEXED
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Measurement Set
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IGVFDS5128CXIS
IGVFDS5128CXIS
released
Json view
File Set Type
experimental data
Summary
cas mediated mutagenesis (Variant FlowFISH)
Assay Term
cas mediated mutagenesis
Sample Summaries
THP-1 cell line, male, Homo sapiens
Protocols
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
Aliases
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM3211UEWZ
InVitroSystem
THP-1
THP-1 cell line, male, Homo sapiens
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO7359LVPI
igvf:donor_of_THP1
male
Homo sapiens
Sequencing Results (Illumina)
8 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1771FPVE
fastq
reads
I2
1
Illumina NextSeq 550
AGGTTATC:TTGT
2.1 MB
Jesse Engreitz, Stanford
validated
IGVFFI1798AJTL
fastq
reads
I1
1
Illumina NextSeq 550
GTCTGATG:TTGT
2.0 MB
Jesse Engreitz, Stanford
validated
IGVFFI1898QYOM
fastq
reads
R1
1
Illumina NextSeq 550
AGGTTATC:TTGT
8.6 MB
Jesse Engreitz, Stanford
validated
IGVFFI3449WZQF
fastq
reads
R1
1
Illumina NextSeq 550
GTCTGATG:TTGT
8.3 MB
Jesse Engreitz, Stanford
validated
IGVFFI5860PVJQ
fastq
reads
R2
1
Illumina NextSeq 550
GTCTGATG:TTGT
10.0 MB
Jesse Engreitz, Stanford
validated
IGVFFI8823JOUV
fastq
reads
I1
1
Illumina NextSeq 550
AGGTTATC:TTGT
2.2 MB
Jesse Engreitz, Stanford
validated
IGVFFI8992CXFT
fastq
reads
R2
1
Illumina NextSeq 550
AGGTTATC:TTGT
10 MB
Jesse Engreitz, Stanford
validated
IGVFFI9984TILJ
fastq
reads
I2
1
Illumina NextSeq 550
GTCTGATG:TTGT
2.1 MB
Jesse Engreitz, Stanford
validated
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford