IGVF

/

File

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File Format

fastq
9544
yaml
831
bed
442
csv
203
tsv
79
bam
65
vcf
54
tar
22
txt
12
owl
11

File Format Type

bed3+
434
bed9+
3
mpra_starr
3
bed3
1
bed6
1

Content Type

reads
9544
seqspec
831
regulatory_regions
414
variants_variants
184
alignments
50
variants
29
variants_regulatory_regions
27
sample sort parameters
26
coding_variants
25
sparse gene count matrix
19

11305 items

SequenceFile
IGVFFI1165AJSO
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2309FCAH
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI6229GGKZ
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI9141IFTT
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI5295OHTL
fastq - reads - I1
Jay Shendure, UW
File Set
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
released
validated
SequenceFile
IGVFFI1792RKRX
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI6599VIPD
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI7164IWPZ
fastq - reads - R3
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI8554OPUE
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2796VWCV
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
ConfigurationFile
IGVFFI7248KXML
yaml - seqspec
Jesse Engreitz, Stanford
File Set
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Seqspec Of
IGVFFI8964HZGC
released
validated
SequenceFile
IGVFFI1163QCXS
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI7103JDWM
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1089XLDA
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1956EMDR
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2908NAIM
fastq - reads - R2
Jay Shendure, UW
File Set
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
released
validated
SequenceFile
IGVFFI1340BULZ
fastq - reads
Jesse Engreitz, Stanford
File Set
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
validated
ConfigurationFile
IGVFFI0714MTNO
yaml - seqspec
Jesse Engreitz, Stanford
File Set
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Seqspec Of
IGVFFI1411ZGTO
released
validated
ConfigurationFile
IGVFFI8240YUYH
yaml - seqspec
Jay Shendure, UW
File Set
scATAC-seq
Seqspec Of
IGVFFI8821SFDV, IGVFFI4136YACE, IGVFFI0014UJDI, IGVFFI2437FQNY
released
validated
SequenceFile
IGVFFI3750JGII
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI3469NFLH
fastq - reads
Jesse Engreitz, Stanford
File Set
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI2905KIJB
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
variant sequencing for prime editing Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
ConfigurationFile
IGVFFI5228SMZU
yaml - seqspec
Ali Mortazavi, UCI
File Set
Parse SPLiT-seq
Seqspec Of
IGVFFI5241MPKQ, IGVFFI0800JAPD
released
validated
ConfigurationFile
IGVFFI8969XVTD
yaml - seqspec
Jesse Engreitz, Stanford
File Set
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Seqspec Of
IGVFFI0721XHEB
released
validated
SequenceFile
IGVFFI5160NESU
fastq - reads - I2
Jay Shendure, UW
File Set
scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
released
validated