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File Format Type
Assembly
Transcriptome Annotation
Controlled Access
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File Size
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File Set Type
Preferred Assay Title
Assay
Annotated Cell Type
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Sample
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Cellular Transformation Target
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47885 items
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1916
SequenceFile
IGVFFI4067OVRO
fastq - reads - I1
Jesse Engreitz, Stanford
MeasurementSe
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci
preview
validated
SequenceFile
IGVFFI1165AJSO
fastq - reads - I2
Jesse Engreitz, Stanford
MeasurementSe
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI0251HKHB
fastq - reads - I1
Jason Buenrostro, Broad
MeasurementSe
single-cell ATAC-seq (SHARE-seq)
released
validated
SequenceFile
IGVFFI5702NMGS
fastq - reads - I1
Ryan Corces, Gladstone Institute UCSF
MeasurementSe
single-nucleus ATAC-seq (10x multiome)
preview
validated
MatrixFile
IGVFFI5092EVUK
tar - cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
Parse SPLiT-seq
released
validated
SequenceFile
IGVFFI4344XJCA
fastq - reads - R2
Leif Ludwig, MDC
MeasurementSe
10x multiome with scMito-seq
preview
validated
SequenceFile
IGVFFI5723DRHI
fastq - reads - R1
Ansuman Satpathy, Stanford
AuxiliarySe
lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
SequenceFile
IGVFFI2309FCAH
fastq - reads - R2
Jesse Engreitz, Stanford
MeasurementSe
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI5850YYGN
fastq - reads - R2
Jason Buenrostro, Broad
MeasurementSe
single-cell ATAC-seq (SHARE-seq)
released
validated
SequenceFile
IGVFFI6229GGKZ
fastq - reads - R1
Jesse Engreitz, Stanford
MeasurementSe
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1822OQDN
fastq - reads - R1
Jason Buenrostro, Broad
MeasurementSe
single-cell ATAC-seq (SHARE-seq)
released
validated
SequenceFile
IGVFFI9141IFTT
fastq - reads - R1
Jesse Engreitz, Stanford
MeasurementSe
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI5295OHTL
fastq - reads - I1
Jay Shendure, UW
AuxiliarySe
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
released
validated
SequenceFile
IGVFFI9170ZKMQ
fastq - reads - R1
Jesse Engreitz, Stanford
MeasurementSe
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI5567DOCL
fastq - reads - I1
Ansuman Satpathy, Stanford
MeasurementSe
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
SequenceFile
IGVFFI1792RKRX
fastq - reads - R1
Jesse Engreitz, Stanford
MeasurementSe
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2011OWCK
fastq - reads - I1
Ryan Corces, Gladstone Institute UCSF
MeasurementSe
single-nucleus ATAC-seq (10x multiome)
preview
validated
SequenceFile
IGVFFI0512DYNY
fastq - reads - R1
Ryan Corces, Gladstone Institute UCSF
MeasurementSe
single-nucleus RNA sequencing assay (10x multiome)
preview
validated
SequenceFile
IGVFFI4256CQHO
fastq - reads - R2
Jesse Engreitz, Stanford
MeasurementSe
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI0414ILTR
fastq - reads - I1
Ryan Corces, Gladstone Institute UCSF
MeasurementSe
single-nucleus RNA sequencing assay (10x multiome)
preview
validated
SequenceFile
IGVFFI5536TZCG
fastq - reads - R2
Ryan Corces, Gladstone Institute UCSF
MeasurementSe
single-nucleus RNA sequencing assay (10x multiome)
preview
validated
SequenceFile
IGVFFI6623FYZW
fastq - reads - R2
Ansuman Satpathy, Stanford
MeasurementSe
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
ConfigurationFile
IGVFFI0043GRDH
yaml - seqspec
Ali Mortazavi, UCI
MeasurementSe
Parse SPLiT-seq
Seqspec Of
IGVFFI3555UMLA
,
IGVFFI2003XTIS
released
validated
ConfigurationFile
IGVFFI9858YEUZ
yaml - seqspec
Ansuman Satpathy, Stanford
MeasurementSe
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Seqspec Of
IGVFFI1447EBOP
,
IGVFFI4191ALPR
,
IGVFFI7787TNYR
,
IGVFFI5693RHUR
released
validated
SequenceFile
IGVFFI6599VIPD
fastq - reads - I2
Jesse Engreitz, Stanford
MeasurementSe
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated