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File Format
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fastq
9246
yaml
767
bed
442
csv
191
tsv
49
vcf
25
txt
16
owl
11
pod5
11
bigWig
7
See all 17 terms
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reads
9246
seqspec
767
regulatory_regions
414
variants_variants
184
variants_regulatory_regions
27
sample sort parameters
26
variants
25
ontology_terms
15
Nanopore reads
11
guide RNA sequences
9
See all 38 terms
25 Items
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10784 items
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432
SequenceFile
IGVFFI1165AJSO
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2309FCAH
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI6229GGKZ
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI9141IFTT
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1792RKRX
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI6599VIPD
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI7164IWPZ
fastq - reads - R3
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for massively parallel reporter assay
released
validated
SequenceFile
IGVFFI8554OPUE
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2796VWCV
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
ConfigurationFile
IGVFFI7248KXML
yaml - seqspec
Jesse Engreitz, Stanford
File Set
gRNA sequencing for CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Seqspec Of
IGVFFI8964HZGC
released
validated
SequenceFile
IGVFFI1163QCXS
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI7103JDWM
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1089XLDA
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1956EMDR
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1340BULZ
fastq - reads
Jesse Engreitz, Stanford
File Set
gRNA sequencing for CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
validated
ConfigurationFile
IGVFFI0714MTNO
yaml - seqspec
Jesse Engreitz, Stanford
File Set
gRNA sequencing for CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Seqspec Of
IGVFFI1411ZGTO
released
validated
ConfigurationFile
IGVFFI8240YUYH
yaml - seqspec
Jay Shendure, UW
File Set
single-cell ATAC-seq
Seqspec Of
IGVFFI8821SFDV
,
IGVFFI4136YACE
,
IGVFFI0014UJDI
,
IGVFFI2437FQNY
released
validated
SequenceFile
IGVFFI3750JGII
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI3469NFLH
fastq - reads
Jesse Engreitz, Stanford
File Set
gRNA sequencing for CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI2905KIJB
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
ConfigurationFile
IGVFFI8969XVTD
yaml - seqspec
Jesse Engreitz, Stanford
File Set
gRNA sequencing for CRISPR interference screen (CRISPR FlowFISH) integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Seqspec Of
IGVFFI0721XHEB
released
validated
SequenceFile
IGVFFI1055BRCU
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1215XWXM
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI7216KWXD
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI6411ZTRX
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
cas mediated mutagenesis (Variant FlowFISH) integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated