IGVFDS2192NCTH

released
File Set Type
experimental data
Summary
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Assay Term
Targeted Genes
Sample Summaries
  • Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 55-65% expression of PPIF) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library
Construct Library Sets
  • IGVFDS6377KNCH guide (sgRNA) library targeting sequence variants in a genomic locus
Protocols
Aliases
jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep2-FFrep1-BinD_AmpliconSequencing

Sequencing Results (Illumina)

8 items
fastq
reads
I2
1
CCTTCGCA:GTCA
3.1 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
TCTCGGTC:ACTG
14 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I2
1
TCTCGGTC:ACTG
3.3 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
CCTTCGCA:GTCA
3.1 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
CCTTCGCA:GTCA
7.3 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
CCTTCGCA:GTCA
14 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
TCTCGGTC:ACTG
7.7 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
TCTCGGTC:ACTG
3.2 MB
Jesse Engreitz, Stanford
validated

Attribution