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IGVFFI7272QBOC

archived
validated
File Set
IGVFDS0257SDNV(functional effect prediction on scope of loci)
Summary
GRCh38 predictive variant effects
File Format
bed
Content Type
variant effects
Aliases
andrew-allen:bluestarr-k562-prediction-file
md5sum
b1fa5545001c84a4761fea3488ffd303
Content MD5sum
a64dc6be63306988842e94c1aac93b28
File Size
1.8 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/predictive_modeling/effects-all.spdi.v2.bed.gz
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
This file is superseded by IGVFFI9643YRGK, which is from a newer version of BlueSTARR.
Attribution
Bill Majoros, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format specification of BlueSTARR
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
virtual Homo sapiens (female) K562 cell line

Files This File Derives From

3 items
json
graph structure
Bill Majoros, Duke
9.3 KB
validated
hdf5
edge weights
Bill Majoros, Duke
63 MB
validated
bed
elements reference
External Lab, Community
16 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
bed
variant effects
GRCh38 predictive filtered variant effects
Bill Majoros, Duke
58 MB
validated