{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI7272QBOC/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI7272QBOC",
"aliases": [
"andrew-allen:bluestarr-k562-prediction-file"
],
"analysis_step_version": "/analysis-step-versions/3a0aa334-d1d6-43bd-92d0-6f66a0e5eae1/",
"assay_titles": [],
"assembly": "GRCh38",
"audit": {},
"award": {
"@id": "/awards/HG011967/",
"component": "predictive modeling"
},
"barcode_map_for": [],
"content_md5sum": "a64dc6be63306988842e94c1aac93b28",
"content_type": "variant effects",
"controlled_access": false,
"creation_timestamp": "2024-03-20T21:27:13.484343+00:00",
"derived_from": [
"/model-files/IGVFFI5128IAHI/",
"/model-files/IGVFFI6828UIAH/",
"/reference-files/IGVFFI3932HEZL/"
],
"file_format": "bed",
"file_format_specifications": [
"/documents/a61b28ae-0d57-49e4-b56e-00acbad6330a/"
],
"file_format_type": "bed3+",
"file_set": {
"@id": "/prediction-sets/IGVFDS0257SDNV/",
"accession": "IGVFDS0257SDNV",
"file_set_type": "functional effect",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM7883WOIS/",
"accession": "IGVFSM7883WOIS",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002067/",
"status": "released",
"term_name": "K562"
}
],
"status": "released",
"summary": "virtual K562 cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "functional effect prediction on scope of loci"
},
"file_size": 1805500144,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI7272QBOC/@@download/IGVFFI7272QBOC.bed.gz",
"input_file_for": [
"/tabular-files/IGVFFI1236SEPK/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/bill-majoros/",
"title": "Bill Majoros, Duke"
},
"loci_list_for": [],
"md5sum": "b1fa5545001c84a4761fea3488ffd303",
"quality_metrics": [],
"release_timestamp": "2025-01-08T18:48:12.593644+00:00",
"s3_uri": "s3://igvf-files/2024/03/20/530d5ffa-253e-4df9-bb9b-73e7092abeb6/IGVFFI7272QBOC.tsv.gz",
"schema_version": "13",
"status": "released",
"submitted_by": {
"@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
"title": "Alejandro Barrera"
},
"submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/raw_data/predictive_modeling/effects-all.spdi.v2.bed.gz",
"summary": "GRCh38 predictive variant effects",
"upload_status": "validated",
"uuid": "530d5ffa-253e-4df9-bb9b-73e7092abeb6",
"workflow": {
"@id": "/workflows/IGVFWF3101OPAH/",
"name": "BlueSTARR workflow",
"uniform_pipeline": false
}
}