IGVF

/

TabularFile

Click and hold a term momentarily to select items without that term.

Content Type

sample sort parameters
26
fold change over control
13
guide RNA sequences
11
guide quantifications
8
elements reference
5
sequence barcodes
4
transcript quantifications
3
differential gene expression quantifications
2
element quantifications
2
peak quantifications
2
MPRA sequence designs
1
barcode to element mapping
1
barcode to sample mapping
1

File Format

tsv
67
csv
11
bed
1

File Format Type

bed3
1

79 items

TabularFile
IGVFFI4074JRJB
csv - guide quantifications - custom
Charles Gersbach, Duke
File Set
CRISPR activation FACS screen targeting IL2RA: fold change over control, guide quantifications
released
validated
TabularFile
IGVFFI8017PKLD
csv - guide quantifications - custom
Charles Gersbach, Duke
File Set
CRISPR knockout FACS screen targeting IL7R: fold change over control, guide quantifications
released
validated
TabularFile
IGVFFI8092FZKL
tsv - elements reference - GRCh38
Jesse Engreitz, Stanford
File Set
Homo sapiens GRCh38 guide RNAs
released
validated
TabularFile
IGVFFI8620CKHK
tsv - sample sort parameters
Jesse Engreitz, Stanford
File Set
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
released
validated
TabularFile
IGVFFI7900YIDY
tsv - transcript quantifications - GRCh38
Charles Gersbach, Duke
File Set
knockout RNA-seq: fold change over control, transcript quantifications
released
validated
TabularFile
IGVFFI5198JCCU
tsv - differential gene expression quantifications - GRCh38
Charles Gersbach, Duke
File Set
interference Perturb-seq: differential gene expression quantifications
released
validated
TabularFile
IGVFFI0420XBKB
tsv - fold change over control - custom
Charles Gersbach, Duke
File Set
CRISPR interference FACS screen targeting CCR7: fold change over control, guide quantifications
released
validated
TabularFile
IGVFFI4762WUEH
tsv - peak quantifications - GRCh38
Charles Gersbach, Duke
File Set
ATAC-seq: fold change over control, peak quantifications
released
validated
TabularFile
IGVFFI7335KPIM
tsv - sample sort parameters
Jesse Engreitz, Stanford
File Set
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
released
validated
TabularFile
IGVFFI4981YFMT
tsv - guide RNA sequences - GRCh38
Jesse Engreitz, Stanford
File Set
Homo sapiens GRCh38 guide RNAs
released
validated
TabularFile
IGVFFI8558XTCT
tsv - sample sort parameters
Jesse Engreitz, Stanford
File Set
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
released
validated
TabularFile
IGVFFI4884FITS
tsv - fold change over control - GRCh38
Charles Gersbach, Duke
File Set
knockout RNA-seq: fold change over control, transcript quantifications
released
validated
TabularFile
IGVFFI5342EBSX
tsv - sample sort parameters
Jesse Engreitz, Stanford
File Set
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
released
validated
TabularFile
IGVFFI3289WICA
csv - guide quantifications - custom
Charles Gersbach, Duke
File Set
CRISPR interference FACS screen targeting CCR7: fold change over control, guide quantifications
released
validated
TabularFile
IGVFFI0853SCNK
tsv - fold change over control - custom
Charles Gersbach, Duke
File Set
CRISPR activation FACS screen targeting IL2RA: fold change over control, guide quantifications
released
validated
TabularFile
IGVFFI7587TJLC
tsv - sequence barcodes
External Lab, Community
File Set
barcodes
released
validated
TabularFile
IGVFFI6830YLEK
tsv - differential gene expression quantifications - GRCh38
Charles Gersbach, Duke
File Set
activation Perturb-seq: differential gene expression quantifications
released
validated
TabularFile
IGVFFI0292XWJM
tsv - element quantifications
Jay Shendure, UW
File Set
MPRA: element quantifications
released
validated
TabularFile
IGVFFI8674KIMY
tsv - transcript quantifications - GRCh38
Charles Gersbach, Duke
File Set
RNA-seq: fold change over control, transcript quantifications
released
validated
TabularFile
IGVFFI6162WULK
tsv - sample sort parameters
Jesse Engreitz, Stanford
File Set
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
released
validated
TabularFile
IGVFFI2410QRVN
tsv - element quantifications
Jay Shendure, UW
File Set
MPRA (scQer): element quantifications
released
validated
TabularFile
IGVFFI5130EWUZ
tsv - guide RNA sequences
Jesse Engreitz, Stanford
File Set
Homo sapiens GRCh38 guide RNAs
released
validated
TabularFile
IGVFFI3072IFRD
tsv - fold change over control - custom
Charles Gersbach, Duke
File Set
CRISPR interference FACS screen targeting CD2: fold change over control, guide quantifications
released
validated
TabularFile
IGVFFI2396MZVU
tsv - sample sort parameters
Jesse Engreitz, Stanford
File Set
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
released
validated
TabularFile
IGVFFI9594ERWN
tsv - sample sort parameters
Jesse Engreitz, Stanford
File Set
cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
released
validated