IGVF

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489 items

TabularFile
IGVFFI5389DBIZ
tsv - barcode to sample mapping
Harinder Singh, University of Pittsburgh
CuratedSe
Homo sapiens barcodes
released
validated
TabularFile
IGVFFI8225EESE
tsv - fragments
Ansuman Satpathy, Stanford
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validation exempted
TabularFile
IGVFFI4074JRJB
csv - guide quantifications - custom
Charles Gersbach, Duke
AnalysisSe
CRISPR activation FACS screen targeting IL2RA integrating a guide (sgRNA) library targeting transcription start sites in IL2RA with low FACS signal control
released
validated
TabularFile
IGVFFI0462IJUO
tsv - bin paired count - GRCh38
Charles Gersbach, Duke
AnalysisSe
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus and a non-targeting guide (sgRNA) library
released
validated
TabularFile
IGVFFI8017PKLD
csv - guide quantifications - custom
Charles Gersbach, Duke
AnalysisSe
CRISPR knockout FACS screen targeting IL7R integrating an expression vector library of BATF3 and a guide (sgRNA) library targeting transcription start sites in many genes with low FACS signal control
released
validated
TabularFile
IGVFFI8092FZKL
tsv - elements reference - GRCh38
Jesse Engreitz, Stanford
CuratedSe
Homo sapiens GRCh38 guide RNAs
released
validated
TabularFile
IGVFFI1235SEAV
tsv - reporter genomic variant effects - GRCh38
Bill Majoros, Duke
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18511, NA19147, NA19185, NA19200, NA19248
released
validated
TabularFile
IGVFFI7693PBDH
tsv - guide RNA sequences - GRCm39
Charles Gersbach, Duke
CuratedSe
Mus musculus GRCm39 guide RNAs
released
validated
TabularFile
IGVFFI0855DXJQ
tsv - fragments
Jason Buenrostro, Broad
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
TabularFile
IGVFFI1798XNPV
tsv - variant effects - hg19
Jesse Engreitz, Stanford
AnalysisSe
CRISPR prime editing Variant-EFFECTS targeting PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
TabularFile
IGVFFI7138DMIL
tsv - cell hashing barcodes
Ansuman Satpathy, Stanford
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
TabularFile
IGVFFI5876KVON
vcf - variants - GRCh38
Tim Reddy, Duke
CuratedSe
Homo sapiens GRCh38 variants
released
validated
TabularFile
IGVFFI8620CKHK
tsv - sample sort parameters
Jesse Engreitz, Stanford
AuxiliarySe
cell sorting for CRISPR FlowFISH screen sorted on the expression of FAM3C integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
validated
TabularFile
IGVFFI8020JTQX
tsv - fragments
Ansuman Satpathy, Stanford
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validation exempted
TabularFile
IGVFFI2466HQBG
tsv - cell hashing barcodes
Ansuman Satpathy, Stanford
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
TabularFile
IGVFFI2325NRPY
tsv - variant effects - hg19
Jesse Engreitz, Stanford
AnalysisSe
CRISPR prime editing Variant-EFFECTS targeting PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus with unsorted FACS input, untransfected controls
preview
validated
TabularFile
IGVFFI3412IJQJ
tsv - fragments
Ansuman Satpathy, Stanford
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validation exempted
TabularFile
IGVFFI4750SIPG
tsv - fragments
Ansuman Satpathy, Stanford
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validation exempted
TabularFile
IGVFFI3524CDMD
csv - guide quantifications
Guillaume Lettre, MHI
AnalysisSe
CRISPR base editing FlowFISH screen targeting NFKBIA integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure
released
validated
TabularFile
IGVFFI0929WRXO
tsv - element quantifications
Jay Shendure, UW
AnalysisSe
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
TabularFile
IGVFFI7266NWTF
csv - unfiltered global differential expression - GRCh38 - GENCODE 32
Gary Hon, UT
AnalysisSe
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
preview
validated
TabularFile
IGVFFI4360VRMZ
vcf - variants - GRCh38
Tim Reddy, Duke
CuratedSe
Homo sapiens GRCh38 variants
released
validated
TabularFile
IGVFFI3120NHVD
tsv - reporter genomic variant effects - GRCh38
Bill Majoros, Duke
AnalysisSe
STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA18861, NA18917, NA19198, NA19201, NA19206
released
validated
TabularFile
IGVFFI5952NKYY
tsv - cell hashing barcodes
Ansuman Satpathy, Stanford
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
TabularFile
IGVFFI3751JHPD
bed - peaks - GRCh38
Ansuman Satpathy, Stanford
AnalysisSe
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validation exempted