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IGVFFI7272QBOC
IGVFFI7272QBOC
released
validated
Json view
File Set
IGVFDS0257SDNV
(functional effect prediction on scope of loci)
Summary
GRCh38 predictive variant effects
Analysis Step Version
/analysis-step-versions/3a0aa334-d1d6-43bd-92d0-6f66a0e5eae1/
File Format
bed
Content Type
variant effects
Aliases
andrew-allen:bluestarr-k562-prediction-file
md5sum
b1fa5545001c84a4761fea3488ffd303
Content MD5sum
a64dc6be63306988842e94c1aac93b28
File Size
1.8 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/predictive_modeling/effects-all.spdi.v2.bed.gz
Reference Source Details
Genome Assembly
GRCh38
File Format Specifications
1 item
Page
Description
Type
Download
Preview
File format specification of BlueSTARR
file format specification
BlueSTARR output file format v2.pdf
Download BlueSTARR output file format v2.pdf
Download BlueSTARR output file format v2.pdf
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7883WOIS
InVitroSystem
K562
virtual K562 cell line, female, Homo sapiens
Files This File Derives From
3 items
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI5128IAHI
IGVFDS3627LKSF
json
graph structure
Bill Majoros, Duke
9.3 KB
validated
IGVFFI6828UIAH
IGVFDS3627LKSF
hdf5
edge weights
Bill Majoros, Duke
63 MB
validated
IGVFFI3932HEZL
IGVFDS4146YLZU
bed
elements reference
External Lab, Community
16 MB
validated
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI1236SEPK
bed
variant effects
GRCh38 predictive variant effects
Bill Majoros, Duke
58 MB
validated
Attribution
Award
HG011967
Principal Investigator(s)
Andrew Allen
,
David Page
,
Bill Majoros
Contact P.I.
Andrew Allen
Lab
Bill Majoros, Duke