IGVF

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34823 items

SequenceFile
IGVFFI4067OVRO
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci
preview
validated
SequenceFile
IGVFFI1165AJSO
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI5702NMGS
fastq - reads - I1
Ryan Corces, Gladstone Institute UCSF
File Set
single-nucleus ATAC-seq (10x multiome)
preview
validated
SequenceFile
IGVFFI4344XJCA
fastq - reads - R2
Leif Ludwig, MDC
File Set
10x multiome with scMito-seq
preview
validated
SequenceFile
IGVFFI5723DRHI
fastq - reads - R1
Ansuman Satpathy, Stanford
File Set
lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)
released
validated
SequenceFile
IGVFFI2309FCAH
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI6229GGKZ
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI9141IFTT
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI5295OHTL
fastq - reads - I1
Jay Shendure, UW
File Set
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
released
validated
SequenceFile
IGVFFI9170ZKMQ
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI5567DOCL
fastq - reads - I1
Ansuman Satpathy, Stanford
File Set
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
SequenceFile
IGVFFI1792RKRX
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2011OWCK
fastq - reads - I1
Ryan Corces, Gladstone Institute UCSF
File Set
single-nucleus ATAC-seq (10x multiome)
preview
validated
SequenceFile
IGVFFI0512DYNY
fastq - reads - R1
Ryan Corces, Gladstone Institute UCSF
File Set
single-nucleus RNA sequencing assay (10x multiome)
preview
validated
SequenceFile
IGVFFI4256CQHO
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI0414ILTR
fastq - reads - I1
Ryan Corces, Gladstone Institute UCSF
File Set
single-nucleus RNA sequencing assay (10x multiome)
preview
validated
SequenceFile
IGVFFI5536TZCG
fastq - reads - R2
Ryan Corces, Gladstone Institute UCSF
File Set
single-nucleus RNA sequencing assay (10x multiome)
preview
validated
SequenceFile
IGVFFI6623FYZW
fastq - reads - R2
Ansuman Satpathy, Stanford
File Set
single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
released
validated
SequenceFile
IGVFFI6599VIPD
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI4428TFDM
fastq - reads - I1
Ryan Corces, Gladstone Institute UCSF
File Set
single-nucleus RNA sequencing assay (10x multiome)
preview
validated
SequenceFile
IGVFFI7691SJPJ
fastq - reads - R2
Ryan Corces, Gladstone Institute UCSF
File Set
single-nucleus ATAC-seq (10x multiome)
preview
validated
SequenceFile
IGVFFI7164IWPZ
fastq - reads - R3
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI7245ERKQ
fastq - reads - R1
Jimmie Ye, UCSF
File Set
single-nucleus ATAC-seq (10x multiome)
preview
validated
SequenceFile
IGVFFI9408SFAX
fastq - reads - I1
Ryan Corces, Gladstone Institute UCSF
File Set
single-nucleus ATAC-seq (10x multiome)
preview
validated
SequenceFile
IGVFFI6643UJDK
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS sorted on the expression of PPIF integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated

Content Type

File Format

Illumina Read Type

Sequencing Kit

Sequencing Platform

Controlled Access

File Set Type

Preferred Assay Title

Assay

Taxa

Sample

Classification

Cellular Transformation Target

Disease

Modification

Treatment

Lab

Award

Upload Status

Status

Externally Hosted