Click and hold a term momentarily to select items without that term.

File Set Type

Taxa

1000 items
  • MeasurementSet
    IGVFDS6647HVMC
    Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
    Jesse Engreitz, Stanford
    Sample Summary
    Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 11-20% expression of PPIF) modified with a guide library
    released
  • MeasurementSet
    IGVFDS4363PDBQ
    Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
    Jesse Engreitz, Stanford
    Sample Summary
    THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library
    released
  • MeasurementSet
    IGVFDS2419JZMR
    CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus
    Jesse Engreitz, Stanford
    Sample Summary
    TeloHAEC cell line, female, Homo sapiens (sorting details: FACS bin for 76-100% expression of TLNRD1) modified with a guide library
    released
  • MeasurementSet
    IGVFDS4736IKQS
    Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
    Jesse Engreitz, Stanford
    Sample Summary
    THP-1 cell line, male, Homo sapiens modified with a guide library
    released
  • MeasurementSet
    IGVFDS5041NPBP
    CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    Jesse Engreitz, Stanford
    Sample Summary
    HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of KITLG) modified with a guide library
    released
  • AuxiliarySet
    IGVFDS8473JDSO
    quantification DNA barcode sequencing
    Jay Shendure, UW
    Summary
    quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
    released
  • MeasurementSet
    IGVFDS5601DSMT
    Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
    Jesse Engreitz, Stanford
    Sample Summary
    THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library
    released
  • MeasurementSet
    IGVFDS8710ZSOZ
    mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    Jesse Engreitz, Stanford
    Sample Summary
    HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of KITLG) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library
    released
  • MeasurementSet
    IGVFDS7147ANAC
    CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    Jesse Engreitz, Stanford
    Sample Summary
    HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of KITLG) modified with a guide library
    released
  • AuxiliarySet
    IGVFDS3120IRAP
    gRNA sequencing
    Jesse Engreitz, Stanford
    Summary
    gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    released
  • AuxiliarySet
    IGVFDS5688OXJC
    gRNA sequencing
    Jesse Engreitz, Stanford
    Summary
    gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    released
  • MeasurementSet
    IGVFDS0885VFHW
    MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
    Jay Shendure, UW
    Sample Summary
    mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days, male, Mus musculus WD44 modified with a reporter library
    released
  • MeasurementSet
    IGVFDS3899ANMJ
    Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
    Jesse Engreitz, Stanford
    Sample Summary
    THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 90-100% expression of PPIF) modified with a guide library
    released
  • MeasurementSet
    IGVFDS5128CXIS
    Variant FlowFISH
    Jesse Engreitz, Stanford
    Sample Summary
    THP-1 cell line, male, Homo sapiens
    released
  • MeasurementSet
    IGVFDS9738RCWL
    Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
    Jesse Engreitz, Stanford
    Sample Summary
    Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 90-100% expression of PPIF) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours, modified with a guide library
    released
  • AuxiliarySet
    IGVFDS8746LSXO
    quantification DNA barcode sequencing
    Jay Shendure, UW
    Summary
    quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
    released
  • AuxiliarySet
    IGVFDS6678UHIV
    gRNA sequencing
    Jesse Engreitz, Stanford
    Summary
    gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    released
  • AuxiliarySet
    IGVFDS0241XMRI
    gRNA sequencing
    Jesse Engreitz, Stanford
    Summary
    gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    released
  • MeasurementSet
    IGVFDS9880SAMJ
    Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
    Jesse Engreitz, Stanford
    Sample Summary
    THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library
    released
  • AuxiliarySet
    IGVFDS8375BGSZ
    gRNA sequencing
    Jesse Engreitz, Stanford
    Summary
    gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci
    released
  • AuxiliarySet
    IGVFDS7833JNUC
    cell sorting
    Jesse Engreitz, Stanford
    Summary
    cell sorting for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
    released
  • AuxiliarySet
    IGVFDS7078DXDI
    gRNA sequencing
    Jesse Engreitz, Stanford
    Summary
    gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
    released
  • CuratedSet
    IGVFDS0056MEON
    ADASTRA allele-specific binding events
    External Lab, Community
    Summary
    Homo sapiens GRCh38 external data for catalog
    released
  • MeasurementSet
    IGVFDS1261RWQY
    mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    Jesse Engreitz, Stanford
    Sample Summary
    HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library
    released
  • MeasurementSet
    IGVFDS1564ZVKC
    mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    Jesse Engreitz, Stanford
    Sample Summary
    HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library
    released