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File Set Type
Taxa
1000 items
MeasurementSet
IGVFDS6647HVMC
Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Jesse Engreitz, Stanford
Sample Summary
Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 11-20% expression of PPIF) modified with a guide library
released
MeasurementSet
IGVFDS4363PDBQ
Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Jesse Engreitz, Stanford
Sample Summary
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 0-25% expression of PPIF) modified with a guide library
released
MeasurementSet
IGVFDS2419JZMR
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus
Jesse Engreitz, Stanford
Sample Summary
TeloHAEC cell line, female, Homo sapiens (sorting details: FACS bin for 76-100% expression of TLNRD1) modified with a guide library
released
MeasurementSet
IGVFDS4736IKQS
Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Jesse Engreitz, Stanford
Sample Summary
THP-1 cell line, male, Homo sapiens modified with a guide library
released
MeasurementSet
IGVFDS5041NPBP
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Jesse Engreitz, Stanford
Sample Summary
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of KITLG) modified with a guide library
released
AuxiliarySet
IGVFDS8473JDSO
quantification DNA barcode sequencing
Jay Shendure, UW
Summary
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
released
MeasurementSet
IGVFDS5601DSMT
Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Jesse Engreitz, Stanford
Sample Summary
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library
released
MeasurementSet
IGVFDS8710ZSOZ
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Jesse Engreitz, Stanford
Sample Summary
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of KITLG) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library
released
MeasurementSet
IGVFDS7147ANAC
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Jesse Engreitz, Stanford
Sample Summary
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of KITLG) modified with a guide library
released
AuxiliarySet
IGVFDS3120IRAP
gRNA sequencing
Jesse Engreitz, Stanford
Summary
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
AuxiliarySet
IGVFDS5688OXJC
gRNA sequencing
Jesse Engreitz, Stanford
Summary
gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
MeasurementSet
IGVFDS0885VFHW
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Jay Shendure, UW
Sample Summary
mouse embryonic stem differentiated cell specimen induced to embryoid body for 14 days, male, Mus musculus WD44 modified with a reporter library
released
MeasurementSet
IGVFDS3899ANMJ
Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Jesse Engreitz, Stanford
Sample Summary
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 90-100% expression of PPIF) modified with a guide library
released
MeasurementSet
IGVFDS5128CXIS
Variant FlowFISH
Jesse Engreitz, Stanford
Sample Summary
THP-1 cell line, male, Homo sapiens
released
MeasurementSet
IGVFDS9738RCWL
Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Jesse Engreitz, Stanford
Sample Summary
Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 90-100% expression of PPIF) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours, modified with a guide library
released
AuxiliarySet
IGVFDS8746LSXO
quantification DNA barcode sequencing
Jay Shendure, UW
Summary
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
released
AuxiliarySet
IGVFDS6678UHIV
gRNA sequencing
Jesse Engreitz, Stanford
Summary
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
AuxiliarySet
IGVFDS0241XMRI
gRNA sequencing
Jesse Engreitz, Stanford
Summary
gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
released
MeasurementSet
IGVFDS9880SAMJ
Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Jesse Engreitz, Stanford
Sample Summary
THP-1 cell line, male, Homo sapiens (sorting details: FACS bin for 26-50% expression of PPIF) modified with a guide library
released
AuxiliarySet
IGVFDS8375BGSZ
gRNA sequencing
Jesse Engreitz, Stanford
Summary
gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci
released
AuxiliarySet
IGVFDS7833JNUC
cell sorting
Jesse Engreitz, Stanford
Summary
cell sorting for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets
released
AuxiliarySet
IGVFDS7078DXDI
gRNA sequencing
Jesse Engreitz, Stanford
Summary
gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3
released
CuratedSet
IGVFDS0056MEON
ADASTRA allele-specific binding events
External Lab, Community
Summary
Homo sapiens GRCh38 external data for catalog
released
MeasurementSet
IGVFDS1261RWQY
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Jesse Engreitz, Stanford
Sample Summary
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library
released
MeasurementSet
IGVFDS1564ZVKC
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Jesse Engreitz, Stanford
Sample Summary
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library