IGVF

/

FileSet

Click and hold a term momentarily to select items without that term.

File Set Type

experimental data
615
gRNA sequencing
216
external data for catalog
46
quantification DNA barcode sequencing
44
cell sorting
26
principal analysis
14
guide RNAs
10
guide library
10
intermediate analysis
8
circularized RNA barcode detection
6
barcodes
5
genome
2
elements
1
transcriptome
1

Taxa

Homo sapiens
809
Mus musculus
120

1004 items

/measurement-sets/IGVFDS6647HVMC/

IGVFDS6647HVMC

jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinB_AmpliconSequencing

PPIF

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO1080XFGV/

experimental data

/labs/jesse-engreitz/

Variant FlowFISH

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

/in-vitro-systems/IGVFSM8601WYGY/

released

Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

feb7d08a-1287-4cac-b362-f81fd5ba1f81

/measurement-sets/IGVFDS4363PDBQ/

IGVFDS4363PDBQ

jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing

PPIF

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO7359LVPI/

experimental data

/labs/jesse-engreitz/

Variant FlowFISH

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

/in-vitro-systems/IGVFSM7022AZSZ/

released

Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fe739718-a398-4e5c-b7b5-4d95497c90ad

/measurement-sets/IGVFDS2419JZMR/

IGVFDS2419JZMR

jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep4_bin4

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO3459DFTW/

experimental data

/labs/jesse-engreitz/

CRISPR FlowFISH screen

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

/in-vitro-systems/IGVFSM5826EWDE/

released

CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus

Homo sapiens

fe738818-a459-4367-8223-af72aa6bca96

/measurement-sets/IGVFDS4736IKQS/

IGVFDS4736IKQS

jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-FACS_Input_AmpliconSequencing

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO7359LVPI/

experimental data

/labs/jesse-engreitz/

Variant FlowFISH

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

/in-vitro-systems/IGVFSM0906STHP/

released

Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fe6d143f-dbd2-40a5-b72b-55021f81951f

/measurement-sets/IGVFDS5041NPBP/

IGVFDS5041NPBP

jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR1_S42
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR2_S48
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR3_S138
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR4_S144

KITLG

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

experimental data

/labs/jesse-engreitz/

CRISPR FlowFISH screen

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

/in-vitro-systems/IGVFSM1131LTFK/

released

CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fe1a8271-fd7e-454e-ae2c-187f1d46d77d

/auxiliary-sets/IGVFDS8473JDSO/

IGVFDS8473JDSO

jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day4_reads

/awards/HG011966/

/rodent-donors/IGVFDO3898MNLZ/

quantification DNA barcode sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS6355YALJ/

/in-vitro-systems/IGVFSM5978TPKG/

released

quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci

Mus musculus

fdfabd72-0a73-454b-bf93-f598df360118

/measurement-sets/IGVFDS5601DSMT/

IGVFDS5601DSMT

jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinB_AmpliconSequencing

PPIF

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO7359LVPI/

experimental data

/labs/jesse-engreitz/

Variant FlowFISH

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

/in-vitro-systems/IGVFSM1683OFWB/

released

Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fd6e5d84-173b-4f03-8de0-67bbec8d433f

/curated-sets/IGVFDS3190PUWD/

IGVFDS3190PUWD

igvf:10X_Multiome_ATAC_cell_barcode_inclusion_list_fileset

/awards/Community/

10X Multiome ATAC cell barcode inclusion list

barcodes

/labs/community/

released

barcodes

fd60d197-3dd4-49bb-9493-0d237ec82007

/measurement-sets/IGVFDS8710ZSOZ/

IGVFDS8710ZSOZ

jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR1_S63
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR2_S69
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR3_S159
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR4_S165

KITLG

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

experimental data

/labs/jesse-engreitz/

CRISPR FlowFISH screen

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

/in-vitro-systems/IGVFSM7299CMAO/

released

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fcaeb9d7-e1f4-4136-9ce7-e43a1f35ee3c

/measurement-sets/IGVFDS7147ANAC/

IGVFDS7147ANAC

jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR1_S14
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR2_S20
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR3_S110
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR4_S116

KITLG

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

experimental data

/labs/jesse-engreitz/

CRISPR FlowFISH screen

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

/in-vitro-systems/IGVFSM3263KXLP/

released

CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fc9ab042-6677-4c24-9a08-261355a7f363

/auxiliary-sets/IGVFDS3120IRAP/

IGVFDS3120IRAP

jesse-engreitz:auxiliary_CRUDO_CCND1_Auxin6hrs-FF1-BinC-PCR1-Rep1_S243
jesse-engreitz:auxiliary_CRUDO_CCND1_Auxin6hrs-FF1-BinC-PCR2-Rep1_S249
jesse-engreitz:auxiliary_CRUDO_CCND1_Auxin6hrs-FF1-BinC-PCR3-Rep1_S285
jesse-engreitz:auxiliary_CRUDO_CCND1_Auxin6hrs-FF1-BinC-PCR4-Rep1_S291

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

gRNA sequencing

/labs/jesse-engreitz/

/measurement-sets/IGVFDS6865SDZA/

/in-vitro-systems/IGVFSM2025NTWT/

released

gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fc23e237-cefd-4218-9b9a-817a676d5b8d

/auxiliary-sets/IGVFDS5688OXJC/

IGVFDS5688OXJC

jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF2-BinC-PCR1_S15
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF2-BinC-PCR2_S21
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF2-BinC-PCR3_S111
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF2-BinC-PCR4_S117

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

gRNA sequencing

/labs/jesse-engreitz/

/measurement-sets/IGVFDS9308CBBI/

/in-vitro-systems/IGVFSM7071BULA/

released

gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fbb50ae3-0460-48a0-9414-7ff400219b33

/measurement-sets/IGVFDS0885VFHW/

IGVFDS0885VFHW

jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads

/assay-terms/OBI_0002675/

/awards/HG011966/

/rodent-donors/IGVFDO3898MNLZ/

experimental data

/labs/jay-shendure/

MPRA

https://www.protocols.io/file/n92rb7r27.pdf

/in-vitro-systems/IGVFSM3546ITTD/

released

MPRA integrating a reporter library targeting accessible genome regions in many genomic loci

Mus musculus

fb95a9da-2dd1-4f85-b7b7-4604eea3838f

/measurement-sets/IGVFDS3899ANMJ/

IGVFDS3899ANMJ

jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinF_AmpliconSequencing

PPIF

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO7359LVPI/

experimental data

/labs/jesse-engreitz/

Variant FlowFISH

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

/in-vitro-systems/IGVFSM1757XEWZ/

released

Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fb676008-1191-4fbf-b590-6e868e8a197f

/measurement-sets/IGVFDS5128CXIS/

IGVFDS5128CXIS

jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO7359LVPI/

experimental data

/labs/jesse-engreitz/

Variant FlowFISH

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

/in-vitro-systems/IGVFSM3211UEWZ/

released

Variant FlowFISH

Homo sapiens

fb47792f-c0be-488b-84bd-c23a65c154a1

/measurement-sets/IGVFDS9738RCWL/

IGVFDS9738RCWL

jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing

PPIF

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO1080XFGV/

experimental data

/labs/jesse-engreitz/

Variant FlowFISH

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

/in-vitro-systems/IGVFSM8638GWPD/

released

Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fb30f5f3-a7fc-435a-8ec3-890a56d9703f

/auxiliary-sets/IGVFDS8746LSXO/

IGVFDS8746LSXO

jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day4_reads

/awards/HG011966/

/rodent-donors/IGVFDO3898MNLZ/

quantification DNA barcode sequencing

/labs/jay-shendure/

/measurement-sets/IGVFDS8540VFIL/

/in-vitro-systems/IGVFSM3811HZXX/

released

quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci

Mus musculus

faf19294-71cd-4e7c-95ac-c84244c19f8d

/auxiliary-sets/IGVFDS6678UHIV/

IGVFDS6678UHIV

jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinD-PCR1_Rep1_S138
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinD-PCR1_Rep2_S193
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinD-PCR2_Rep1_S144
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinD-PCR2_Rep2_S199
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinD-PCR3_Rep1_S150
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinD-PCR3_Rep2_S205
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinD-PCR4_Rep1_S156
jesse-engreitz:auxiliary_CRUDO_MYC-Auxin6hrs-FF2-BinD-PCR4_Rep2_S211

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

gRNA sequencing

/labs/jesse-engreitz/

/measurement-sets/IGVFDS0955GQMF/

/in-vitro-systems/IGVFSM4390QYVS/

released

gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fab08936-6c04-432f-a070-361b3c31a60d

/auxiliary-sets/IGVFDS0241XMRI/

IGVFDS0241XMRI

jesse-engreitz:auxiliary_CRUDO_SSFA2-Auxin0hrs-FF1-BinD-PCR1-Rep1_S4
jesse-engreitz:auxiliary_CRUDO_SSFA2-Auxin0hrs-FF1-BinD-PCR2-Rep1_S10
jesse-engreitz:auxiliary_CRUDO_SSFA2-Auxin0hrs-FF1-BinD-PCR3-Rep1_S58
jesse-engreitz:auxiliary_CRUDO_SSFA2-Auxin0hrs-FF1-BinD-PCR4-Rep1_S64

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

gRNA sequencing

/labs/jesse-engreitz/

/measurement-sets/IGVFDS1338GOGT/

/in-vitro-systems/IGVFSM5613UEVU/

released

gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

fa85b865-894b-4c64-9bb4-e3947b38c9bc

/measurement-sets/IGVFDS9880SAMJ/

IGVFDS9880SAMJ

jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing

PPIF

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO7359LVPI/

experimental data

/labs/jesse-engreitz/

Variant FlowFISH

https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1

/in-vitro-systems/IGVFSM0425HXKG/

released

Variant FlowFISH integrating a guide (sgRNA) library targeting sequence variants in a genomic locus

Homo sapiens

fa80915b-6ed1-4719-95bc-30b16118a77f

/auxiliary-sets/IGVFDS8375BGSZ/

IGVFDS8375BGSZ

jesse-engreitz:auxiliary_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinB-PCR1_S74
jesse-engreitz:auxiliary_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinB-PCR2_S170
jesse-engreitz:auxiliary_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinB-PCR3_S266
jesse-engreitz:auxiliary_CRUDO_PILOT_CCND1-Auxin0hrs-FF1-BinB-PCR4_S362

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

gRNA sequencing

/labs/jesse-engreitz/

/measurement-sets/IGVFDS1099HASC/

/in-vitro-systems/IGVFSM7863HHJP/

released

gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in 36 genomic loci

Homo sapiens

fa517b22-7f49-4302-9ec0-6d2c46ac63aa

/auxiliary-sets/IGVFDS7833JNUC/

IGVFDS7833JNUC

jesse-engreitz:auxiliary_sortparams_CRUDO_FAM3C_Auxin0hrs-FF1

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

cell sorting

/labs/jesse-engreitz/

/measurement-sets/IGVFDS2269HBNS/, /measurement-sets/IGVFDS5285ESHJ/, /measurement-sets/IGVFDS6273UIFG/, /measurement-sets/IGVFDS6704KMTH/, /measurement-sets/IGVFDS6095WNVW/, /measurement-sets/IGVFDS5612XEIT/

/in-vitro-systems/IGVFSM5410WZKF/, /in-vitro-systems/IGVFSM0069TVXJ/, /in-vitro-systems/IGVFSM3123SZYY/, /in-vitro-systems/IGVFSM7317UFYW/, /in-vitro-systems/IGVFSM4222TCYN/, /in-vitro-systems/IGVFSM6177XAAS/

released

cell sorting for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets

Homo sapiens

fa4696e5-5830-46dc-8deb-4bb7530a2f51

/auxiliary-sets/IGVFDS7078DXDI/

IGVFDS7078DXDI

jesse-engreitz:auxiliary_NOS3_CRISPRi_FF_R1_FFrep1_binD_PCR2_S196

/awards/HG011972/

/human-donors/IGVFDO3459DFTW/

gRNA sequencing

/labs/jesse-engreitz/

/measurement-sets/IGVFDS2449OXNT/

/in-vitro-systems/IGVFSM1237FNBR/

released

gRNA sequencing for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting sequence variants, transcription start sites in NOS3

Homo sapiens

fa1fa17c-c035-4a0b-805c-f2f89a570689

/curated-sets/IGVFDS0056MEON/

IGVFDS0056MEON

igvf:igvf_catalog_beta_v0.1_adastra_allele_specific_binding

GRCh38

/awards/Community/

ADASTRA allele-specific binding events

external data for catalog

/labs/community/

released

Homo sapiens GRCh38 external data for catalog

Homo sapiens

f981e985-56b9-41ce-bfa1-ee00f7cdaee9

/measurement-sets/IGVFDS1261RWQY/

IGVFDS1261RWQY

jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR1-Rep1_S29
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR2-Rep1_S35
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR3-Rep1_S83
jesse-engreitz:measurement_CRUDO_SSFA2-Auxin6hrs-FF1-BinE-PCR4-Rep1_S89

ITPRID2

/assay-terms/OBI_0003661/

/awards/HG011972/

/human-donors/IGVFDO0384OZRW/

experimental data

/labs/jesse-engreitz/

CRISPR FlowFISH screen

https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1

/in-vitro-systems/IGVFSM9082URPW/

released

mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci

Homo sapiens

f94bbd36-f814-4589-b13f-86cab3019eec