IGVF

/

SequenceFile

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Content Type

reads
13647

File Format

fastq
13647

Illumina Read Type

R1
3607
R2
3517
I1
3309
I2
3134
R3
80

Sequencing Platform

Illumina NextSeq 550
8081
Illumina NovaSeq X
3560
Illumina NextSeq 2000
952
Illumina NovaSeq 6000
570
Illumina NextSeq 500
294
Illumina MiSeq
138
Illumina NovaSeq X Plus
52

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5
408
NextSeq 500/550 High-Output v2.5 Kit
312
NextSeq 1000/2000 P3 Reagent Kit
252
NovaSeq X Series 25B Reagent Kit
152
MiSeq Reagent Kit v2
138
NextSeq 1000/2000 P2 Reagent Kit
60

Illumina Read Type

13647 items

SequenceFile
IGVFFI4067OVRO
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting genes in many genomic loci
preview
validated
SequenceFile
IGVFFI1165AJSO
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2309FCAH
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI6229GGKZ
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI9141IFTT
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI5295OHTL
fastq - reads - I1
Jay Shendure, UW
File Set
gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci
released
validated
SequenceFile
IGVFFI9170ZKMQ
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI1792RKRX
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI4256CQHO
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI6599VIPD
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI7164IWPZ
fastq - reads - R3
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI6643UJDK
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI8554OPUE
fastq - reads - R1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2364WFHK
fastq - reads - I2
Gary Hon, UT
File Set
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
preview
validated
SequenceFile
IGVFFI5126QCHA
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI2796VWCV
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI2756EFLJ
fastq - reads - R1
Gary Hon, UT
File Set
gRNA sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
preview
validated
SequenceFile
IGVFFI8709YHGT
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI1587BLSX
fastq - reads - R2
Gary Hon, UT
File Set
cell hashing barcode sequencing for CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
preview
validated
SequenceFile
IGVFFI5968EMNM
fastq - reads - R1
Gary Hon, UT
File Set
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
preview
validated
SequenceFile
IGVFFI1163QCXS
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI7103JDWM
fastq - reads - I2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1840UZRL
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
preview
validated
SequenceFile
IGVFFI1089XLDA
fastq - reads - I1
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated
SequenceFile
IGVFFI1956EMDR
fastq - reads - R2
Jesse Engreitz, Stanford
File Set
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
released
validated