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File Set Type
All
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experimental data
718
gRNA sequencing
262
external data for catalog
51
intermediate analysis
49
quantification DNA barcode sequencing
44
principal analysis
37
guide library
27
cell sorting
26
guide RNAs
13
circularized RNA barcode detection
6
See all 16 terms
Status
released
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1247 items
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Assay Targeted Genes
Assay Term
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Description
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File Set Type
Functional Assay Mechanisms
Genes
Input File Sets
Lab
Measurement Sets
Preferred Assay Title
Protocols
Sample Summary
Samples
Scope
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Sequencing Library Types
Status
Summary
Taxa
Taxa
Transcriptome Annotations
UUID
/measurement-sets/IGVFDS6647HVMC/
IGVFDS6647HVMC
jesse-engreitz:220829_8merInsertion-Jurkat_NoStimulation-Amp_PPIF_promoter-BioRep3-FFrep1-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8601WYGY/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
feb7d08a-1287-4cac-b362-f81fd5ba1f81
/measurement-sets/IGVFDS4363PDBQ/
IGVFDS4363PDBQ
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7022AZSZ/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fe739718-a398-4e5c-b7b5-4d95497c90ad
/measurement-sets/IGVFDS2419JZMR/
IGVFDS2419JZMR
jesse-engreitz:measurement_set_eRZ10_teloHAEC_TLNRD1_enhancer_CRISPRi_FlowFISH_Rep4_bin4
TLNRD1
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO3459DFTW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM5826EWDE/
released
CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting candidate cis-regulatory elements in a genomic locus
Homo sapiens
fe738818-a459-4367-8223-af72aa6bca96
/measurement-sets/IGVFDS4736IKQS/
IGVFDS4736IKQS
jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep4-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM0906STHP/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fe6d143f-dbd2-40a5-b72b-55021f81951f
/measurement-sets/IGVFDS3969UCCQ/
IGVFDS3969UCCQ
charles-gersbach:cd8-tcells-rna-seq-cas-ko-gata3-rep3
/assay-terms/OBI_0003090/
/awards/HG012053/
/human-donors/IGVFDO4048LCOU/
experimental data
/labs/charles-gersbach/
RNA-seq
https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1
,
https://www.protocols.io/view/rnaseq-of-primary-human-t-cells-overexpressing-bat-c5pdy5i6
/primary-cells/IGVFSM7117ATUZ/
released
CRISPR knockout RNA-seq integrating a guide (sgRNA) library targeting transcription start sites in GATA3
Homo sapiens
fe29fcd6-36dd-4bba-acde-cc30fbb5ebc7
/measurement-sets/IGVFDS5041NPBP/
IGVFDS5041NPBP
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR1_S42
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR2_S48
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR3_S138
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF4-BinF-PCR4_S144
KITLG
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM1131LTFK/
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fe1a8271-fd7e-454e-ae2c-187f1d46d77d
/auxiliary-sets/IGVFDS8473JDSO/
IGVFDS8473JDSO
jay-shendure:dev_CRE_mEBs_repB_bulk_DNA_day4_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS6355YALJ/
/in-vitro-systems/IGVFSM5978TPKG/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
fdfabd72-0a73-454b-bf93-f598df360118
/analysis-sets/IGVFDS9202ZPBI/
IGVFDS9202ZPBI
charles-gersbach:cd8-tcells-intermediate-set-atac-seq-chronic-activation-batf3
/awards/HG012053/
/human-donors/IGVFDO1522NSLA/
,
/human-donors/IGVFDO9588OERW/
intermediate analysis
/measurement-sets/IGVFDS0986HRDF/
,
/measurement-sets/IGVFDS5328ZNKL/
/labs/charles-gersbach/
https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
/primary-cells/IGVFSM8821YQXI/
,
/primary-cells/IGVFSM7232YAVV/
released
ATAC-seq: alignments
Homo sapiens
fdbe1d71-d4b0-4025-a01e-46b963a45785
/measurement-sets/IGVFDS5601DSMT/
IGVFDS5601DSMT
jesse-engreitz:230531S019-THP1-P151-Amp_PPIF_enhancer-BioRep2-FFrep2-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1683OFWB/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fd6e5d84-173b-4f03-8de0-67bbec8d433f
/curated-sets/IGVFDS3190PUWD/
IGVFDS3190PUWD
igvf:10X_Multiome_ATAC_cell_barcode_inclusion_list_fileset
/awards/Community/
10X Multiome ATAC cell barcode inclusion list
barcodes
/labs/community/
released
barcodes
fd60d197-3dd4-49bb-9493-0d237ec82007
/measurement-sets/IGVFDS2160ZTSJ/
IGVFDS2160ZTSJ
charles-gersbach:cd8-tcells-measurement-set-crispr-ko-tfome-batf3-over-high-bin-rep1
IL7R
/assay-terms/OBI_0003661/
/awards/HG012053/
/human-donors/IGVFDO8306NDTY/
experimental data
/labs/charles-gersbach/
CRISPR FACS screen
https://www.protocols.io/view/tfome-crisprko-screens-81wgbxk8olpk/v1
/primary-cells/IGVFSM8084QKPW/
released
CRISPR knockout FACS screen integrating a guide (sgRNA) library targeting transcription start sites in many genes
Homo sapiens
fd5cf966-33dd-44fe-a22a-8bde46de6152
/analysis-sets/IGVFDS2296EFNK/
IGVFDS2296EFNK
charles-gersbach:analysis-set-crispra-region3-1umET1-ipsc-cm-targeted-hicar-rep2-cool
/awards/HG012053/
/human-donors/IGVFDO3212TBUN/
intermediate analysis
/measurement-sets/IGVFDS3127UNFB/
/labs/charles-gersbach/
https://www.protocols.io/view/hicar-for-human-ipsc-cm-following-enhancer-perturb-3byl49mdrgo5
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
/in-vitro-systems/IGVFSM1839OFIJ/
released
HiCAR: contact matrix
Homo sapiens
fd37c4f1-7481-416f-a99d-3810404afa51
/analysis-sets/IGVFDS6344XBAV/
IGVFDS6344XBAV
charles-gersbach:cd8-tcells-analysis-set-atac-seq-chronic-activation-batf3
/awards/HG012053/
/human-donors/IGVFDO1522NSLA/
,
/human-donors/IGVFDO9588OERW/
principal analysis
/analysis-sets/IGVFDS9202ZPBI/
,
/analysis-sets/IGVFDS3609QWUZ/
/labs/charles-gersbach/
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
/primary-cells/IGVFSM3805WZUU/
,
/primary-cells/IGVFSM6508DFUL/
,
/primary-cells/IGVFSM8821YQXI/
,
/primary-cells/IGVFSM7232YAVV/
released
ATAC-seq: fold change over control, peak quantifications
Homo sapiens
fcdc0263-c1e7-4ba0-87ba-5bcbfef7461c
/measurement-sets/IGVFDS8710ZSOZ/
IGVFDS8710ZSOZ
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR1_S63
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR2_S69
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR3_S159
jesse-engreitz:measurement_CRUDO_KITLG-Auxin6hrs-FF2-BinC-PCR4_S165
KITLG
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM7299CMAO/
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fcaeb9d7-e1f4-4136-9ce7-e43a1f35ee3c
/measurement-sets/IGVFDS7147ANAC/
IGVFDS7147ANAC
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR1_S14
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR2_S20
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR3_S110
jesse-engreitz:measurement_CRUDO_KITLG-Auxin0hrs-FF2-BinB-PCR4_S116
KITLG
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
experimental data
/labs/jesse-engreitz/
CRISPR FlowFISH screen
https://www.protocols.io/view/crispri-of-regulatory-elements-upon-degron-operati-5jyl82d59l2w/v1
/in-vitro-systems/IGVFSM3263KXLP/
released
mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fc9ab042-6677-4c24-9a08-261355a7f363
/auxiliary-sets/IGVFDS3120IRAP/
IGVFDS3120IRAP
jesse-engreitz:auxiliary_CRUDO_CCND1_Auxin6hrs-FF1-BinC-PCR1-Rep1_S243
jesse-engreitz:auxiliary_CRUDO_CCND1_Auxin6hrs-FF1-BinC-PCR2-Rep1_S249
jesse-engreitz:auxiliary_CRUDO_CCND1_Auxin6hrs-FF1-BinC-PCR3-Rep1_S285
jesse-engreitz:auxiliary_CRUDO_CCND1_Auxin6hrs-FF1-BinC-PCR4-Rep1_S291
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
gRNA sequencing
/labs/jesse-engreitz/
/measurement-sets/IGVFDS6865SDZA/
/in-vitro-systems/IGVFSM2025NTWT/
released
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fc23e237-cefd-4218-9b9a-817a676d5b8d
/measurement-sets/IGVFDS9961QTUB/
IGVFDS9961QTUB
charles-gersbach:measurement-set-bulk-atac-chir4um-ipsc-cm-rep2
/assay-terms/OBI_0003089/
/awards/HG012053/
/human-donors/IGVFDO3212TBUN/
experimental data
/labs/charles-gersbach/
ATAC-seq
https://www.protocols.io/view/atac-seq-for-human-ipsc-cm-following-gsk3-inhibiti-5qpvokj27l4o
/in-vitro-systems/IGVFSM9172PRNN/
released
ATAC-seq
Homo sapiens
fc218399-8c88-4d99-88f7-dbbce4050170
/auxiliary-sets/IGVFDS5688OXJC/
IGVFDS5688OXJC
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF2-BinC-PCR1_S15
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF2-BinC-PCR2_S21
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF2-BinC-PCR3_S111
jesse-engreitz:auxiliary_CRUDO_KITLG-Auxin0hrs-FF2-BinC-PCR4_S117
/awards/HG011972/
/human-donors/IGVFDO0384OZRW/
gRNA sequencing
/labs/jesse-engreitz/
/measurement-sets/IGVFDS9308CBBI/
/in-vitro-systems/IGVFSM7071BULA/
released
gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Homo sapiens
fbb50ae3-0460-48a0-9414-7ff400219b33
/measurement-sets/IGVFDS0885VFHW/
IGVFDS0885VFHW
jay-shendure:dev_CRE_mEBs_repB_bulk_RNA_day14_reads
/assay-terms/OBI_0002675/
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
experimental data
/labs/jay-shendure/
MPRA
https://www.protocols.io/file/n92rb7r27.pdf
/in-vitro-systems/IGVFSM3546ITTD/
released
MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
fb95a9da-2dd1-4f85-b7b7-4604eea3838f
/measurement-sets/IGVFDS3899ANMJ/
IGVFDS3899ANMJ
jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-BioRep3-FFrep3-BinF_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1757XEWZ/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fb676008-1191-4fbf-b590-6e868e8a197f
/measurement-sets/IGVFDS5128CXIS/
IGVFDS5128CXIS
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO7359LVPI/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3211UEWZ/
released
untransfected prime editing Variant-EFFECTS
Homo sapiens
fb47792f-c0be-488b-84bd-c23a65c154a1
/measurement-sets/IGVFDS9738RCWL/
IGVFDS9738RCWL
jesse-engreitz:220829_8merInsertion-Jurkat_Stimulation-Amp_PPIF_promoter-BioRep3-FFrep2-BinF_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8638GWPD/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
fb30f5f3-a7fc-435a-8ec3-890a56d9703f
/auxiliary-sets/IGVFDS9693EKGR/
IGVFDS9693EKGR
charles-gersbach:cd8-tcells-auxiliary-set-crispri-ccr7-low-bin-rep1
/awards/HG012053/
/human-donors/IGVFDO3231VPAA/
gRNA sequencing
/labs/charles-gersbach/
/measurement-sets/IGVFDS4930BLTW/
/primary-cells/IGVFSM7413JCSK/
released
gRNA sequencing for CRISPR interference FACS screen integrating a guide (sgRNA) library targeting transcription start sites in many genes
Homo sapiens
fb19e037-5dec-45bc-9a68-cf959a8281ea
/auxiliary-sets/IGVFDS8746LSXO/
IGVFDS8746LSXO
jay-shendure:dev_CRE_mEBs_rep2B_part1_bulk_DNA_day4_reads
/awards/HG011966/
/rodent-donors/IGVFDO3898MNLZ/
quantification DNA barcode sequencing
/labs/jay-shendure/
/measurement-sets/IGVFDS8540VFIL/
/in-vitro-systems/IGVFSM3811HZXX/
released
quantification DNA barcode sequencing for MPRA integrating a reporter library targeting accessible genome regions in many genomic loci
Mus musculus
faf19294-71cd-4e7c-95ac-c84244c19f8d
/measurement-sets/IGVFDS1619VKNB/
IGVFDS1619VKNB
charles-gersbach:cd8-tcells-atac-seq-acute-activation-batf3-rep1
/assay-terms/OBI_0003089/
/awards/HG012053/
/human-donors/IGVFDO9588OERW/
experimental data
/labs/charles-gersbach/
ATAC-seq
https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn
/primary-cells/IGVFSM0066TACG/
released
ATAC-seq integrating an expression vector library of BATF3
Homo sapiens
fac6ae1a-55ce-44cc-879c-2b167fb2ff8d