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INDEXED
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MeasurementSet
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IGVFDS5674PNNL
IGVFDS5674PNNL
released
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
bone marrow cell (cellular sub pool: SS-PKR 1), male, Homo sapiens (37 years)
Protocols
https://www.protocols.io/view/share-seq-v1-bmbik2ke
Aliases
bradley-bernstein:scRNA Lib 6
buenrostro-bernstein:scRNA Lib 6
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0046KXNZ
fastq
reads
R2
1482
Illumina NovaSeq 6000
3.2 GB
Jason Buenrostro, Broad
validated
IGVFFI0104DBGJ
fastq
reads
R2
2536
Illumina NovaSeq 6000
2.3 GB
Jason Buenrostro, Broad
validated
IGVFFI0132OMEH
fastq
reads
R1
2344
Illumina NovaSeq 6000
974 MB
Jason Buenrostro, Broad
validated
IGVFFI0874BAJX
fastq
reads
R2
1578
Illumina NovaSeq 6000
3.1 GB
Jason Buenrostro, Broad
validated
IGVFFI1748SURF
fastq
reads
R1
1386
Illumina NovaSeq 6000
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI2069IHGD
fastq
reads
R1
1578
Illumina NovaSeq 6000
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI2106FLTI
fastq
reads
R2
1674
Illumina NovaSeq 6000
3.1 GB
Jason Buenrostro, Broad
validated
IGVFFI3518YKVN
fastq
reads
R1
1674
Illumina NovaSeq 6000
1.1 GB
Jason Buenrostro, Broad
validated
IGVFFI3749RPPB
fastq
reads
R2
1386
Illumina NovaSeq 6000
3.1 GB
Jason Buenrostro, Broad
validated
IGVFFI4369GCMY
fastq
reads
R2
2440
Illumina NovaSeq 6000
2.4 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM2165FAHM
PrimaryCell
bone marrow
bone marrow cell (cellular sub pool: SS-PKR 1), male, Homo sapiens (37 years)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO8099ZPMK
bradley-bernstein:Donor 1507
buenrostro-bernstein:Donor 1507
male
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5278IBSB
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
buenrostro-bernstein:human-bone-marrow-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS0490FGKQ
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 6
buenrostro-bernstein:scATAC Lib 6
Jason Buenrostro, Broad
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad