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MeasurementSet
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Assay
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in vitro CRISPR screen using flow cytometry
41
Preferred Assay Title
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None
Variant-EFFECTS
41
Control Type
All
None
unsorted FACS input
8
untransfected
1
Construct Library Data
All
None
guide library
40
Readout Genes
All
None
PPIF
32
Sequencing Platform
All
None
Illumina NextSeq 550
41
input_for
/analysis-sets/IGVFDS6299IJHG/
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Taxa
UUID
/measurement-sets/IGVFDS0333TAKU/
IGVFDS0333TAKU
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep4-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7887QAEK/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f3a508a6-9a40-40e7-8808-1b68515c8341
/measurement-sets/IGVFDS4758QDZH/
IGVFDS4758QDZH
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep2-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3439ONMT/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
f03e05ef-1c13-41e4-9227-cee234dac1af
/measurement-sets/IGVFDS5704ISFI/
IGVFDS5704ISFI
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-BinD_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM9226UZTE/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
e6050ebf-9c50-4aad-9f6e-bdfb12be236f
/measurement-sets/IGVFDS9964KTTT/
IGVFDS9964KTTT
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep3-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8391DTJB/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
e1c2d755-5400-44ce-8d72-90bce1337d32
/measurement-sets/IGVFDS7163VHFR/
IGVFDS7163VHFR
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep4-BinD_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8534PHPO/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
db72b3c4-daf7-4c01-ae5a-27a4a79c197f
/measurement-sets/IGVFDS4884AZCV/
IGVFDS4884AZCV
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep3-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM2669ZPPW/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
d8342139-e51e-453a-a35e-ba8efbe1c107
/measurement-sets/IGVFDS5913QKWA/
IGVFDS5913QKWA
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep3-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7453CDOR/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
d49b8a0c-bcfe-44d9-a53c-786dd3bf2448
/measurement-sets/IGVFDS7480YPZN/
IGVFDS7480YPZN
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep1-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM9783LUAL/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
d1d6217c-5fbe-416a-81d4-bff091527407
/measurement-sets/IGVFDS2388VNTG/
IGVFDS2388VNTG
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep1-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM2021SEKU/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
d0e6b481-427c-41bb-9743-bb53eb2c38fd
/measurement-sets/IGVFDS5594RPYL/
IGVFDS5594RPYL
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep2-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM9903HPOM/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
c8166490-fcfe-43b9-a229-122af3a37dc8
/measurement-sets/IGVFDS4869FXYY/
IGVFDS4869FXYY
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-Jurkat-PE2_Exp2_NegControl_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM3422KXGR/
released
untransfected prime editing Variant-EFFECTS
Homo sapiens
c07dac4a-f892-4b8a-bb92-d2d8b7c1b8c2
/measurement-sets/IGVFDS5504TLBF/
IGVFDS5504TLBF
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep2-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM4816WKOM/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
bfe34d6a-01b5-44fe-ad7a-3ac97fffe9af
/measurement-sets/IGVFDS5578GVXT/
IGVFDS5578GVXT
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep3-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM6388LKCE/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
b61a76ab-555a-4d7e-95cb-e3bd6399a56f
/measurement-sets/IGVFDS9602KUWY/
IGVFDS9602KUWY
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep2-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM4036WXDC/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
9e42f95e-f3b2-4e54-9d39-e711b508d9b4
/measurement-sets/IGVFDS0061JZWG/
IGVFDS0061JZWG
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep3-BinD_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM4672UCMH/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
96f36ea9-0e2b-4aae-a55e-69ec7c23995f
/measurement-sets/IGVFDS0595OBOA/
IGVFDS0595OBOA
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM4893GPVV/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
9294f0be-c60c-45ef-b177-3b9616138751
/measurement-sets/IGVFDS0974QLVO/
IGVFDS0974QLVO
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM8798UNXX/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
908e6d73-bd3d-4c70-a99f-4f3f98b47a7a
/measurement-sets/IGVFDS2609BGAI/
IGVFDS2609BGAI
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep1-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM9828HZOI/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
8aec074b-d6ab-4982-8dfa-cc4b88a9a512
/measurement-sets/IGVFDS6710CDSE/
IGVFDS6710CDSE
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep2-BinD_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM6665OGEE/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
86136a72-bde1-4c6c-b956-cb034652b39e
/measurement-sets/IGVFDS1832KJVS/
IGVFDS1832KJVS
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep1-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM1338SHML/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
7d75f0d2-d576-4090-bc1c-c898131f43e5
/measurement-sets/IGVFDS8633UBLT/
IGVFDS8633UBLT
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep3-BinA_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM5076ZJCL/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
7a4a6201-26c0-4725-8fe7-637b188e91e3
/measurement-sets/IGVFDS1769XASS/
IGVFDS1769XASS
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep4-BinC_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM4017CUIN/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
767ce0ed-5543-428e-bcfd-b7b95b95afa7
/measurement-sets/IGVFDS9080CILW/
IGVFDS9080CILW
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep2-BinD_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM9682UDFK/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
718b62e6-a01c-4a01-b802-98e4a09c0f68
/measurement-sets/IGVFDS4623JVYR/
IGVFDS4623JVYR
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-FACS_Input_AmpliconSequencing
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM2087SKJC/
released
unsorted FACS input CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
70450bf6-d4cc-4957-af0e-d175aaa7380d
/measurement-sets/IGVFDS5856FZKF/
IGVFDS5856FZKF
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep2-FFrep2-BinB_AmpliconSequencing
PPIF
/assay-terms/OBI_0003661/
/awards/HG011972/
/human-donors/IGVFDO1080XFGV/
experimental data
/labs/jesse-engreitz/
Variant-EFFECTS
https://www.protocols.io/view/flowfish-with-primeflow-36wgq3q4olk5/v1
/in-vitro-systems/IGVFSM7961LTZR/
released
CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus
Homo sapiens
6c8ecad6-445f-4b0a-b1ab-aea54add7456