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INDEXED
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SequenceFile
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IGVFFI1898QYOM
IGVFFI1898QYOM
released
validated
Json view
File Set
IGVFDS5128CXIS
(untransfected prime editing Variant-EFFECTS)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:230523pPPIFEnformer-THP1-Amp_PPIF_promoter-THP1-PE2_Exp4_NegControl-PCRrep2_R1
md5sum
02192eeab48147953b0df84a654c74c1
Content MD5sum
9e6238f04cfb747459fbc03a0887f4dd
File Size
8.6 MB
Submitted File Name
230523pPPIFEnformerTHP1-THP1-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep1_BinNeg-PCRrep2_S402_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jesse Engreitz, Stanford
(
HG011972
—
Jesse Engreitz
)
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Illumina Read Type
R1
Index
AGGTTATC:TTGT
Average Read Length
150
Read Count
253854
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM3211UEWZ
InVitroSystem
THP-1
Homo sapiens (male) THP-1 cell line modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)