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IGVFDS2302NLIO

released
Aliases
charles-gersbach:cd8-tcells-analysis-set-atac-seq-acute-activation-batf3
File Set Type
principal analysis
Summary
ATAC-seq: alignments, fold change over control, peak quantifications
Workflows
Publications
Samples
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
Protocols

Files

8 items
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.2 GB
filtered
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.7 GB
filtered
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
2.0 GB
filtered
validated
tsv
fold change over control
GRCh38 fold change over control
Charles Gersbach, Duke
4.3 MB
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
2.2 GB
filtered
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.8 GB
filtered
validated
tsv
peak quantifications
GRCh38 peak quantifications
Charles Gersbach, Duke
2.5 MB
validated
bam
alignments
GRCh38 filtered alignments
Charles Gersbach, Duke
1.1 GB
filtered
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

6 items
Sample Terms
Associated Construct Library Sets
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library

Donors

3 items
Aliases
  • charles-gersbach:cd8-tcells-donor-10
unspecified
Homo sapiens
  • charles-gersbach:cd8-tcells-donor-11
unspecified
Homo sapiens
  • charles-gersbach:cd8-tcells-donor-9
unspecified
Homo sapiens

Associated Construct Library Sets

2 items
Summary
Library Design Files
expression vector library of BATF3
control transduction expression vector library

MeasurementSet Input File Sets

6 items
Controls
ATAC-seq integrating an expression vector library of BATF3
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
ATAC-seq integrating an expression vector library of BATF3
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
ATAC-seq integrating an expression vector library of BATF3
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
control transduction ATAC-seq integrating a control transduction expression vector library
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
control transduction ATAC-seq integrating a control transduction expression vector library
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
control transduction ATAC-seq integrating a control transduction expression vector library
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke