IGVFDS2302NLIO

released

No limitations

Aliases

charles-gersbach:cd8-tcells-analysis-set-atac-seq-acute-activation-batf3

File Set Type

principal analysis

Summary

ATAC-seq integrating an expression vector library of BATF3 and a reference transduction expression vector library with reference transduction control

Publications

Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens

Samples

Homo sapiens CD8-positive, alpha-beta memory T primary cell, stimulated with 300 percent Antibody Coated Bead, transfected with a expression vector library

Protocols

https://www.protocols.io/view/atac-seq-primary-human-t-cells-overexpressing-batf-c5pfy5jn

Attribution

Charles Gersbach, Duke

(

HG012053 — Charles Gersbach

)

Files

8 items

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

1.2 GB

Gersbach GGR ATAC-seq Pipeline

filtered

validated

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

1.7 GB

Gersbach GGR ATAC-seq Pipeline

filtered

validated

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

2.0 GB

Gersbach GGR ATAC-seq Pipeline

filtered

validated

tsv

fold change over control

GRCh38 fold change over control

Charles Gersbach, Duke

4.3 MB

Gersbach GGR ATAC-seq Pipeline

validated

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

2.2 GB

Gersbach GGR ATAC-seq Pipeline

filtered

validated

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

1.8 GB

Gersbach GGR ATAC-seq Pipeline

filtered

validated

tsv

peak quantifications

GRCh38 peak quantifications

Charles Gersbach, Duke

2.5 MB

Gersbach GGR ATAC-seq Pipeline

validated

bam

alignments

GRCh38 filtered alignments

Charles Gersbach, Duke

1.1 GB

Gersbach GGR ATAC-seq Pipeline

filtered

validated

File Association Graph

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File Set

File

AnalysisSet

MeasurementSet

Samples

6 items

Sample Terms

Associated Construct Library Sets

Summary

PrimaryCell

CD8-positive, alpha-beta memory T cell

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

PrimaryCell

CD8-positive, alpha-beta memory T cell

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

PrimaryCell

CD8-positive, alpha-beta memory T cell

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

PrimaryCell

CD8-positive, alpha-beta memory T cell

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

PrimaryCell

CD8-positive, alpha-beta memory T cell

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

PrimaryCell

CD8-positive, alpha-beta memory T cell

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

Donors

3 items

Aliases

charles-gersbach:cd8-tcells-donor-10

unspecified

Homo sapiens

charles-gersbach:cd8-tcells-donor-11

unspecified

Homo sapiens

charles-gersbach:cd8-tcells-donor-9

unspecified

Homo sapiens

Associated Construct Library Sets

2 items

Summary

Library Design Files

expression vector library of BATF3

reference transduction expression vector library

MeasurementSet Input File Sets
Show aliases columns

6 items

Controls

ATAC-seq integrating an expression vector library of BATF3

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

ATAC-seq integrating an expression vector library of BATF3

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

ATAC-seq integrating an expression vector library of BATF3

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

reference transduction ATAC-seq integrating a reference transduction expression vector library

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

reference transduction ATAC-seq integrating a reference transduction expression vector library

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library

reference transduction ATAC-seq integrating a reference transduction expression vector library

Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library