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Analysis Set Type

Assay Title

Assembly

56 items
  • intermediate
    AnalysisSet
    IGVFDS9202ZPBI
    ATAC-seq: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • principal
    AnalysisSet
    IGVFDS6344XBAV
    ATAC-seq: fold change over control, peak quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • principal
    AnalysisSet
    IGVFDS0320JXJG
    CRISPR activation FACS screen targeting CCR7: fold change over control, guide quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
    released
  • intermediate
    AnalysisSet
    IGVFDS4430NOFL
    knockout RNA-seq: transcriptome alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS5056OAGR
    prime editing Variant FlowFISH targeting PPIF: variant effects
    Jesse Engreitz, Stanford
    Samples
    THP-1 cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of PPIF
    released
  • principal
    AnalysisSet
    IGVFDS2302NLIO
    ATAC-seq: fold change over control, peak quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • intermediate
    AnalysisSet
    IGVFDS5478QWPN
    CRISPR activation FACS screen targeting IL2RA: alignments
    Charles Gersbach, Duke
    Samples
    Jurkat cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL2RA
    released
  • intermediate
    AnalysisSet
    IGVFDS1013MILB
    ATAC-seq: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • intermediate
    AnalysisSet
    IGVFDS4488GLKL
    CRISPR activation FACS screen targeting CCR7: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
    released
  • principal
    AnalysisSet
    IGVFDS7196OWBU
    CRISPR activation FACS screen targeting IL2RA: fold change over control, guide quantifications
    Charles Gersbach, Duke
    Samples
    Jurkat cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL2RA
    released
  • intermediate
    AnalysisSet
    IGVFDS7944XZYE
    CRISPR knockout FACS screen targeting IL7R: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL7R
    released
  • principal
    AnalysisSet
    IGVFDS7801YPEU
    scATAC-seq: signal
    Jay Shendure, UW
    Samples
    mouse embryonic stem cell differentiated cell specimen induced to embryoid body, at 1 time point(s) post change
    released
  • principal
    AnalysisSet
    IGVFDS4021XJLW
    scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix
    Jay Shendure, UW
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to neuron, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS9053MHCS
    CRISPR interference FlowFISH screen targeting TLNRD1
    Jesse Engreitz, Stanford
    Samples
    TeloHAEC cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of TLNRD1
    released
  • intermediate
    AnalysisSet
    IGVFDS0006MFFD
    knockout RNA-seq: transcriptome alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS9906UGWB
    knockout RNA-seq: fold change over control, transcript quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS3423PSID
    prime editing Variant FlowFISH targeting PPIF: variant effects
    Jesse Engreitz, Stanford
    Samples
    THP-1 cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of PPIF
    released
  • intermediate
    AnalysisSet
    IGVFDS5498STRV
    CRISPR interference FACS screen targeting CD2: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CD2
    released
  • intermediate
    AnalysisSet
    IGVFDS6924DJJC
    knockout RNA-seq: transcriptome alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS4011VZXE
    activation Perturb-seq: filtered feature barcode matrix
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS8648GJCE
    Parse SPLiT-seq: sparse gene count matrix
    Ali Mortazavi, UCI
    Samples
    left cerebral cortex multiplexed sample
    released
  • intermediate
    AnalysisSet
    IGVFDS7323SUVK
    Parse SPLiT-seq: sparse gene count matrix
    Ali Mortazavi, UCI
    Samples
    left cerebral cortex multiplexed sample
    released
  • intermediate
    AnalysisSet
    IGVFDS5066GYDY
    RNA-seq: transcriptome alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • principal
    AnalysisSet
    IGVFDS5239SBBT
    activation Perturb-seq: differential gene expression quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS5031MNRR
    prime editing Variant FlowFISH targeting PPIF: variant effects
    Jesse Engreitz, Stanford
    Samples
    THP-1 cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of PPIF
    released