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377 items
intermediate
AnalysisSet
IGVFDS3222WCZH
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of adrenal gland, epididymis, ovary, oviduct, testis, cellular sub pool(s): 008B_67B
released
intermediate
AnalysisSet
IGVFDS1162EVFG
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of epididymis, hypothalamus, ovary, oviduct, pituitary gland, testis, cellular sub pool(s): 007_67A
released
intermediate
AnalysisSet
IGVFDS7903FOXV
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Ansuman Satpathy, Stanford
Samples
Homo sapiens multiplexed sample of GM25256 (WTC-11), H7-hESC
released
No limitations
intermediate
AnalysisSet
IGVFDS9167HYTZ
scRNA-seq
Harinder Singh, University of Pittsburgh
Samples
Homo sapiens multiplexed sample of B cell
preview
HMB
intermediate
AnalysisSet
IGVFDS9651EAQD
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of epididymis, hypothalamus, ovary, oviduct, pituitary gland, testis, cellular sub pool(s): 007_67C
released
intermediate
AnalysisSet
IGVFDS9202ZPBI
Unspecified assay
Charles Gersbach, Duke
revoked
intermediate
AnalysisSet
IGVFDS6907GONR
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of hypothalamus, liver, pituitary gland, cellular sub pool(s): 005_67A
released
principal
AnalysisSet
IGVFDS5394QLIN
lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites, phenotype-associated variants genome-wide associated with autism spectrum disorder
Nadav Ahituv, UCSF
Samples
Homo sapiens H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron, at 7 day(s) post change, transfected with a reporter library
released
intermediate
AnalysisSet
IGVFDS2296EFNK
CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
Charles Gersbach, Duke
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, perturbed with 1 μM Endothelin-1 for 3 days, transfected with a guide library
released
No limitations
principal
AnalysisSet
IGVFDS6344XBAV
ATAC-seq integrating a control transduction expression vector library and an expression vector library of BATF3 with control transduction control
Charles Gersbach, Duke
Samples
Homo sapiens CD8-positive, alpha-beta memory T primary cell, stimulated with 300 percent Antibody Coated Bead for 14 days, transfected with a expression vector library
released
No limitations
intermediate
AnalysisSet
IGVFDS8591YLLY
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of heart, left cerebral cortex, left hippocampal formation, right cerebral cortex, right hippocampal formation, cellular sub pool(s): 003_67K
released
intermediate
AnalysisSet
IGVFDS0985WASW
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of heart, left cerebral cortex, left hippocampal formation, right cerebral cortex, right hippocampal formation, cellular sub pool(s): 003_67H
released
principal
AnalysisSet
IGVFDS9192YMGI
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Gary Hon, UT
Samples
Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 12 day(s) post change, modified with CRISPRi Sp-dCas9, transfected with a guide library, cellular sub pool(s): subpool_LW261, subpool_LW262, subpool_LW263, subpool_LW264, subpool_LW265, subpool_LW266, subpool_LW267, subpool_LW268
preview
principal
AnalysisSet
IGVFDS6924DJAZ
CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
Gary Hon, UT
Samples
Homo sapiens H9 differentiated cell specimen induced to cardiac muscle cell, at 12 day(s) post change, modified with CRISPRi Sp-dCas9, transfected with a guide library, cellular sub pool(s): subpool_LW421, subpool_LW422, subpool_LW423, subpool_LW424
preview
intermediate
AnalysisSet
IGVFDS9120FMTV
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of gastrocnemius, left cerebral cortex, left hippocampal formation, right cerebral cortex, right hippocampal formation, cellular sub pool(s): 011_67I
released
intermediate
AnalysisSet
IGVFDS1158CYSK
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of heart, liver, cellular sub pool(s): 004_67H
released
intermediate
AnalysisSet
IGVFDS9838RJAM
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of gastrocnemius, kidney, cellular sub pool(s): 010_67F
released
intermediate
AnalysisSet
IGVFDS7679CRNV
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of hypothalamus, liver, pituitary gland, cellular sub pool(s): 005_67L
Mus musculus brain tissue, cellular sub pool(s): SS-PKR 434
released
uniformly processed
intermediate
AnalysisSet
IGVFDS4060YBFY
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of adrenal gland, epididymis, ovary, oviduct, testis, cellular sub pool(s): 008_67F
released
principal
AnalysisSet
IGVFDS0577SVCR
Proliferation CRISPR interference screen integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure
Guillaume Lettre, MHI
Samples
Homo sapiens TeloHAEC cell line, modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS5511BUBP
Parse SPLiT-seq
Ali Mortazavi, UCI
Samples
Mus musculus multiplexed sample of hypothalamus, liver, pituitary gland, cellular sub pool(s): 005_67K
released
intermediate
AnalysisSet
IGVFDS1949MRJM
single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
Ansuman Satpathy, Stanford
Samples
Homo sapiens multiplexed sample of GM25256 (WTC-11), H1-hESC, H9, HEK293T
released
No limitations
principal
AnalysisSet
IGVFDS0320JXJG
CRISPR activation FACS screen targeting CCR7 integrating a guide (sgRNA) library targeting transcription start sites in many genes with low FACS signal control
Charles Gersbach, Duke
Samples
Homo sapiens CD8-positive, alpha-beta memory T primary cell, modified with CRISPRa Sa-dCas9-VP64, transfected with a guide library, sorted on expression of CCR7