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114 items
intermediate
AnalysisSet
IGVFDS9202ZPBI
ATAC-seq: alignments
Charles Gersbach, Duke
Samples
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
released
principal
AnalysisSet
IGVFDS5394QLIN
lentiMPRA: reporter genomic variant effects
Nadav Ahituv, UCSF
Samples
neural progenitor cell pooled cell specimen, transfected with a reporter library
released
intermediate
AnalysisSet
IGVFDS2296EFNK
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
released
principal
AnalysisSet
IGVFDS6344XBAV
ATAC-seq: fold change over control, peak quantifications
Charles Gersbach, Duke
Samples
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
preview
principal
AnalysisSet
IGVFDS6924DJAZ
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
Gary Hon, UT
Samples
H9 differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
released
intermediate
AnalysisSet
IGVFDS9608RUYZ
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS8055FNVD
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS3159CKGQ
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
HL-1 cell line, transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS4430NOFL
knockout RNA-seq: transcriptome alignments
Charles Gersbach, Duke
Samples
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
released
principal
AnalysisSet
IGVFDS5056OAGR
prime editing Variant-EFFECTS targeting PPIF: variant effects
Jesse Engreitz, Stanford
Samples
THP-1 cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of PPIF
released
principal
AnalysisSet
IGVFDS2302NLIO
ATAC-seq: fold change over control, peak quantifications
Charles Gersbach, Duke
Samples
CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
released
intermediate
AnalysisSet
IGVFDS5322ZITQ
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
released
principal
AnalysisSet
IGVFDS4003HZAB
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
Gary Hon, UT
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
preview
principal
AnalysisSet
IGVFDS3461ZPPS
RNA-seq: fold change over control, transcript quantifications
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, antagonized with treatment(s)
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL7R
mouse embryonic stem cell differentiated cell specimen induced to embryoid body, at 1 time point(s) post change
released
principal
AnalysisSet
IGVFDS7797WATU
HiCAR: bin paired count, differential chromatin contact quantifications
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
GM25256 (WTC-11) differentiated cell specimen induced to neuron, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library