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114 items
  • intermediate
    AnalysisSet
    IGVFDS9202ZPBI
    ATAC-seq: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • principal
    AnalysisSet
    IGVFDS5394QLIN
    lentiMPRA: reporter genomic variant effects
    Nadav Ahituv, UCSF
    Samples
    neural progenitor cell pooled cell specimen, transfected with a reporter library
    released
  • intermediate
    AnalysisSet
    IGVFDS2296EFNK
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS6344XBAV
    ATAC-seq: fold change over control, peak quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • principal
    AnalysisSet
    IGVFDS9192YMGI
    interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix
    Gary Hon, UT
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
    preview
  • principal
    AnalysisSet
    IGVFDS6924DJAZ
    interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
    Gary Hon, UT
    Samples
    H9 differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
    preview
  • principal
    AnalysisSet
    IGVFDS0320JXJG
    CRISPR activation FACS screen targeting CCR7: fold change over control, guide quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
    released
  • intermediate
    AnalysisSet
    IGVFDS9608RUYZ
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS8055FNVD
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS3159CKGQ
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    HL-1 cell line, transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS4430NOFL
    knockout RNA-seq: transcriptome alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS5056OAGR
    prime editing Variant-EFFECTS targeting PPIF: variant effects
    Jesse Engreitz, Stanford
    Samples
    THP-1 cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of PPIF
    released
  • principal
    AnalysisSet
    IGVFDS2302NLIO
    ATAC-seq: fold change over control, peak quantifications
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • intermediate
    AnalysisSet
    IGVFDS5322ZITQ
    HiCAR: contact matrix
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS4003HZAB
    interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
    Gary Hon, UT
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
    preview
  • principal
    AnalysisSet
    IGVFDS3461ZPPS
    RNA-seq: fold change over control, transcript quantifications
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, antagonized with treatment(s)
    released
  • intermediate
    AnalysisSet
    IGVFDS5478QWPN
    CRISPR activation FACS screen targeting IL2RA: alignments
    Charles Gersbach, Duke
    Samples
    Jurkat cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL2RA
    released
  • intermediate
    AnalysisSet
    IGVFDS1013MILB
    ATAC-seq: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, transfected with a expression vector library
    released
  • intermediate
    AnalysisSet
    IGVFDS4488GLKL
    CRISPR activation FACS screen targeting CCR7: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of CCR7
    released
  • principal
    AnalysisSet
    IGVFDS7196OWBU
    CRISPR activation FACS screen targeting IL2RA: fold change over control, guide quantifications
    Charles Gersbach, Duke
    Samples
    Jurkat cell line, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL2RA
    released
  • principal
    AnalysisSet
    IGVFDS1824XDMU
    prime editing Variant-EFFECTS targeting IL2RA: variant effects
    Jesse Engreitz, Stanford
    Samples
    Jurkat cell line, stimulated with treatment(s), modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL2RA
    preview
  • intermediate
    AnalysisSet
    IGVFDS7944XZYE
    CRISPR knockout FACS screen targeting IL7R: alignments
    Charles Gersbach, Duke
    Samples
    CD8-positive, alpha-beta memory T cell primary cell, modified with CRISPR modifications, transfected with a guide library, sorted on expression of IL7R
    released
  • principal
    AnalysisSet
    IGVFDS7801YPEU
    scATAC-seq: fragments, peaks, signal, sparse peak count matrix
    Jay Shendure, UW
    Samples
    mouse embryonic stem cell differentiated cell specimen induced to embryoid body, at 1 time point(s) post change
    released
  • principal
    AnalysisSet
    IGVFDS7797WATU
    HiCAR: bin paired count, differential chromatin contact quantifications
    Charles Gersbach, Duke
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 1 time point(s) post change, perturbed with treatment(s), transfected with a guide library
    released
  • principal
    AnalysisSet
    IGVFDS4021XJLW
    scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix
    Jay Shendure, UW
    Samples
    GM25256 (WTC-11) differentiated cell specimen induced to neuron, at 1 time point(s) post change, modified with CRISPR modifications, transfected with a guide library
    released