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179 items
intermediate
AnalysisSet
IGVFDS7903FOXV
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
multiplexed sample of GM25256 (WTC-11), H7-hESC
released
intermediate
AnalysisSet
IGVFDS9202ZPBI
Unspecified assay
Charles Gersbach, Duke
revoked
principal
AnalysisSet
IGVFDS5394QLIN
lentiMPRA: reporter genomic variant effects
Nadav Ahituv, UCSF
Samples
H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron, at 7 day(s) post change, transfected with a reporter library
released
intermediate
AnalysisSet
IGVFDS2296EFNK
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, perturbed with 1 μM Endothelin-1 for 3 days, transfected with a guide library
released
principal
AnalysisSet
IGVFDS6344XBAV
ATAC-seq: alignments, fold change over control, peak quantifications
Charles Gersbach, Duke
Samples
CD8-positive, alpha-beta memory T primary cell primary cell, transfected with a expression vector library
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 12 day(s) post change, modified with CRISPRi Sp-dCas9, transfected with a guide library
preview
principal
AnalysisSet
IGVFDS6924DJAZ
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
Gary Hon, UT
Samples
H9 differentiated cell specimen induced to cardiac muscle cell, at 12 day(s) post change, modified with CRISPRi Sp-dCas9, transfected with a guide library
CD8-positive, alpha-beta memory T primary cell primary cell, modified with CRISPRa Sa-dCas9-VP64, transfected with a guide library, sorted on expression of CCR7
released
intermediate
AnalysisSet
IGVFDS5192PMWB
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
multiplexed sample of H1-hESC
released
intermediate
AnalysisSet
IGVFDS9608RUYZ
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, perturbed with 1 μM Endothelin-1 for 3 days, transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS8055FNVD
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS3114UZXE
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
multiplexed sample of GM25256 (WTC-11)
released
intermediate
AnalysisSet
IGVFDS9896QVZT
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
multiplexed sample of GM25256 (WTC-11), H9, HepG2
released
intermediate
AnalysisSet
IGVFDS3159CKGQ
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
HL-1 cell line, transfected with a guide library
released
intermediate
AnalysisSet
IGVFDS5153IDEO
SHARE-seq: fragments, sparse gene count matrix
Jason Buenrostro, Broad
Samples
colon tissue
released
intermediate
AnalysisSet
IGVFDS4430NOFL
Unspecified assay
Charles Gersbach, Duke
revoked
intermediate
AnalysisSet
IGVFDS0793KZKS
10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
Ansuman Satpathy, Stanford
Samples
multiplexed sample of B cell, bone marrow
released
principal
AnalysisSet
IGVFDS5056OAGR
prime editing Variant-EFFECTS targeting PPIF: variant effects
Jesse Engreitz, Stanford
Samples
THP-1 cell line, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library, sorted on expression of PPIF
released
principal
AnalysisSet
IGVFDS2302NLIO
ATAC-seq: alignments, fold change over control, peak quantifications
Charles Gersbach, Duke
Samples
CD8-positive, alpha-beta memory T primary cell primary cell, transfected with a expression vector library
released
intermediate
AnalysisSet
IGVFDS5322ZITQ
HiCAR: contact matrix
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, transfected with a guide library
released
principal
AnalysisSet
IGVFDS4003HZAB
interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression
Gary Hon, UT
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 12 day(s) post change, modified with CRISPRi Sp-dCas9, transfected with a guide library
preview
principal
AnalysisSet
IGVFDS3461ZPPS
RNA-seq: fold change over control, transcript quantifications, transcriptome alignments
Charles Gersbach, Duke
Samples
GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 28 day(s) post change, antagonized with 4 μM GSK3 inhibition for 7 days