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377 items
  • intermediate
    AnalysisSet
    IGVFDS3222WCZH
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of adrenal gland, epididymis, ovary, oviduct, testis, cellular sub pool(s): 008B_67B
    released
  • intermediate
    AnalysisSet
    IGVFDS1162EVFG
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of epididymis, hypothalamus, ovary, oviduct, pituitary gland, testis, cellular sub pool(s): 007_67A
    released
  • intermediate
    AnalysisSet
    IGVFDS7903FOXV
    single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
    Ansuman Satpathy, Stanford
    Samples
    Homo sapiens multiplexed sample of GM25256 (WTC-11), H7-hESC
    released
    No limitations
  • intermediate
    AnalysisSet
    IGVFDS9167HYTZ
    scRNA-seq
    Harinder Singh, University of Pittsburgh
    Samples
    Homo sapiens multiplexed sample of B cell
    preview
    HMB
  • intermediate
    AnalysisSet
    IGVFDS9651EAQD
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of epididymis, hypothalamus, ovary, oviduct, pituitary gland, testis, cellular sub pool(s): 007_67C
    released
  • intermediate
    AnalysisSet
    IGVFDS9202ZPBI
    Unspecified assay
    Charles Gersbach, Duke
    revoked
  • intermediate
    AnalysisSet
    IGVFDS6907GONR
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of hypothalamus, liver, pituitary gland, cellular sub pool(s): 005_67A
    released
  • principal
    AnalysisSet
    IGVFDS5394QLIN
    lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites, phenotype-associated variants genome-wide associated with autism spectrum disorder
    Nadav Ahituv, UCSF
    Samples
    Homo sapiens H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron, at 7 day(s) post change, transfected with a reporter library
    released
  • intermediate
    AnalysisSet
    IGVFDS2296EFNK
    CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus
    Charles Gersbach, Duke
    Samples
    Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, perturbed with 1 μM Endothelin-1 for 3 days, transfected with a guide library
    released
    No limitations
  • principal
    AnalysisSet
    IGVFDS6344XBAV
    ATAC-seq integrating a control transduction expression vector library and an expression vector library of BATF3 with control transduction control
    Charles Gersbach, Duke
    Samples
    Homo sapiens CD8-positive, alpha-beta memory T primary cell, stimulated with 300 percent Antibody Coated Bead for 14 days, transfected with a expression vector library
    released
    No limitations
  • intermediate
    AnalysisSet
    IGVFDS8591YLLY
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of heart, left cerebral cortex, left hippocampal formation, right cerebral cortex, right hippocampal formation, cellular sub pool(s): 003_67K
    released
  • intermediate
    AnalysisSet
    IGVFDS0985WASW
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of heart, left cerebral cortex, left hippocampal formation, right cerebral cortex, right hippocampal formation, cellular sub pool(s): 003_67H
    released
  • principal
    AnalysisSet
    IGVFDS9192YMGI
    CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    Gary Hon, UT
    Samples
    Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 12 day(s) post change, modified with CRISPRi Sp-dCas9, transfected with a guide library, cellular sub pool(s): subpool_LW261, subpool_LW262, subpool_LW263, subpool_LW264, subpool_LW265, subpool_LW266, subpool_LW267, subpool_LW268
    preview
  • principal
    AnalysisSet
    IGVFDS6924DJAZ
    CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci
    Gary Hon, UT
    Samples
    Homo sapiens H9 differentiated cell specimen induced to cardiac muscle cell, at 12 day(s) post change, modified with CRISPRi Sp-dCas9, transfected with a guide library, cellular sub pool(s): subpool_LW421, subpool_LW422, subpool_LW423, subpool_LW424
    preview
  • intermediate
    AnalysisSet
    IGVFDS9120FMTV
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of gastrocnemius, left cerebral cortex, left hippocampal formation, right cerebral cortex, right hippocampal formation, cellular sub pool(s): 011_67I
    released
  • intermediate
    AnalysisSet
    IGVFDS1158CYSK
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of heart, liver, cellular sub pool(s): 004_67H
    released
  • intermediate
    AnalysisSet
    IGVFDS9838RJAM
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of gastrocnemius, kidney, cellular sub pool(s): 010_67F
    released
  • intermediate
    AnalysisSet
    IGVFDS7679CRNV
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of hypothalamus, liver, pituitary gland, cellular sub pool(s): 005_67L
    released
  • intermediate
    AnalysisSet
    IGVFDS8415FVDT
    single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
    Jason Buenrostro, Broad
    Samples
    Mus musculus brain tissue, cellular sub pool(s): SS-PKR 129
    released
    uniformly processed
  • intermediate
    AnalysisSet
    IGVFDS2240UYEO
    single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
    Jason Buenrostro, Broad
    Samples
    Mus musculus brain tissue, cellular sub pool(s): SS-PKR 434
    released
    uniformly processed
  • intermediate
    AnalysisSet
    IGVFDS4060YBFY
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of adrenal gland, epididymis, ovary, oviduct, testis, cellular sub pool(s): 008_67F
    released
  • principal
    AnalysisSet
    IGVFDS0577SVCR
    Proliferation CRISPR interference screen integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure
    Guillaume Lettre, MHI
    Samples
    Homo sapiens TeloHAEC cell line, modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
    released
  • intermediate
    AnalysisSet
    IGVFDS5511BUBP
    Parse SPLiT-seq
    Ali Mortazavi, UCI
    Samples
    Mus musculus multiplexed sample of hypothalamus, liver, pituitary gland, cellular sub pool(s): 005_67K
    released
  • intermediate
    AnalysisSet
    IGVFDS1949MRJM
    single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
    Ansuman Satpathy, Stanford
    Samples
    Homo sapiens multiplexed sample of GM25256 (WTC-11), H1-hESC, H9, HEK293T
    released
    No limitations
  • principal
    AnalysisSet
    IGVFDS0320JXJG
    CRISPR activation FACS screen targeting CCR7 integrating a guide (sgRNA) library targeting transcription start sites in many genes with low FACS signal control
    Charles Gersbach, Duke
    Samples
    Homo sapiens CD8-positive, alpha-beta memory T primary cell, modified with CRISPRa Sa-dCas9-VP64, transfected with a guide library, sorted on expression of CCR7
    released