{
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"AnalysisSet",
"FileSet",
"Item"
],
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],
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],
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{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM4716FORO](/primary-cells/IGVFSM4716FORO/) has in progress subobject treatment [725c21b1-d202-4a6c-89a4-e4fc05a001e8](/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/).",
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"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM4716FORO/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM8800PZZL](/primary-cells/IGVFSM8800PZZL/) has in progress subobject treatment [725c21b1-d202-4a6c-89a4-e4fc05a001e8](/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM8800PZZL/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0066TACG](/primary-cells/IGVFSM0066TACG/) has in progress subobject treatment [725c21b1-d202-4a6c-89a4-e4fc05a001e8](/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0066TACG/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM0293OVAT](/primary-cells/IGVFSM0293OVAT/) has in progress subobject treatment [725c21b1-d202-4a6c-89a4-e4fc05a001e8](/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM0293OVAT/"
},
{
"category": "NTR term ID",
"detail": "Treatment term for [725c21b1-d202-4a6c-89a4-e4fc05a001e8](/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/) has been newly requested. Treatments with a newly requested term ID are expected to have it updated following its addition to the appropriate ontology database.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_treatment_term_id_check",
"path": "/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM3998OQDA](/primary-cells/IGVFSM3998OQDA/) has in progress subobject treatment [725c21b1-d202-4a6c-89a4-e4fc05a001e8](/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM3998OQDA/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM6851CRLW](/primary-cells/IGVFSM6851CRLW/) has in progress subobject treatment [725c21b1-d202-4a6c-89a4-e4fc05a001e8](/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM6851CRLW/"
}
],
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{
"category": "missing age",
"detail": "Primary cell [IGVFSM4716FORO](/primary-cells/IGVFSM4716FORO/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM4716FORO/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM8800PZZL](/primary-cells/IGVFSM8800PZZL/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM8800PZZL/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM0066TACG](/primary-cells/IGVFSM0066TACG/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM0066TACG/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM0293OVAT](/primary-cells/IGVFSM0293OVAT/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
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"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM0293OVAT/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM3998OQDA](/primary-cells/IGVFSM3998OQDA/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
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"path": "/primary-cells/IGVFSM3998OQDA/"
},
{
"category": "missing age",
"detail": "Primary cell [IGVFSM6851CRLW](/primary-cells/IGVFSM6851CRLW/) is missing `upper_bound_age`, `lower_bound_age`, and `age_units`. Tissues, primary cells, and whole organisms are expected to specify a lower bound age, upper bound age, and age units.",
"level": 40,
"level_name": "WARNING",
"name": "audit_biosample_age",
"path": "/primary-cells/IGVFSM6851CRLW/"
}
]
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}
],
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}
]
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],
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"aliases": [
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],
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{
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"Item"
],
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"summary": "CD8-positive, alpha-beta memory T cell",
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}
],
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"summary": "Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library",
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"treatments": [
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}
]
},
{
"@id": "/primary-cells/IGVFSM3998OQDA/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3998OQDA",
"aliases": [
"charles-gersbach:cd8-tcells-primary-cell-acute-activation-gfp-rep1"
],
"classifications": [
"primary cell"
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e1533003-0a58-47b1-aa1a-615dbb6aafb2/",
"certificate_identifier": "IP117-01",
"controlled_access": false,
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000909/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
"status": "released",
"summary": "Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/",
"purpose": "stimulation",
"status": "in progress",
"summary": "Treatment of 300 percent Antibody Coated Bead",
"treatment_type": "protein"
}
]
},
{
"@id": "/primary-cells/IGVFSM8800PZZL/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8800PZZL",
"aliases": [
"charles-gersbach:cd8-tcells-primary-cell-acute-activation-gfp-rep3"
],
"classifications": [
"primary cell"
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e1533003-0a58-47b1-aa1a-615dbb6aafb2/",
"certificate_identifier": "IP117-01",
"controlled_access": false,
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000909/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
"status": "released",
"summary": "Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/",
"purpose": "stimulation",
"status": "in progress",
"summary": "Treatment of 300 percent Antibody Coated Bead",
"treatment_type": "protein"
}
]
},
{
"@id": "/primary-cells/IGVFSM4716FORO/",
"@type": [
"PrimaryCell",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4716FORO",
"aliases": [
"charles-gersbach:cd8-tcells-primary-cell-acute-activation-batf3-rep2"
],
"classifications": [
"primary cell"
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/e1533003-0a58-47b1-aa1a-615dbb6aafb2/",
"certificate_identifier": "IP117-01",
"controlled_access": false,
"status": "released"
}
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000909/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "CD8-positive, alpha-beta memory T cell",
"term_name": "CD8-positive, alpha-beta memory T cell"
}
],
"status": "released",
"summary": "Homo sapiens CD8-positive, alpha-beta memory T cell treated with 300 percent Antibody Coated Bead, transduced (lentivirus) with a expression vector library",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/725c21b1-d202-4a6c-89a4-e4fc05a001e8/",
"purpose": "stimulation",
"status": "in progress",
"summary": "Treatment of 300 percent Antibody Coated Bead",
"treatment_type": "protein"
}
]
}
],
"schema_version": "9",
"status": "released",
"submitted_by": {
"@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
"title": "Alejandro Barrera"
},
"submitted_files_timestamp": "2024-09-05T20:42:48.546501+00:00",
"summary": "ATAC-seq: alignments, fold change over control, peak quantifications",
"uuid": "dddf113e-e357-4ec4-bb4f-ab705219db19",
"workflows": [
{
"@id": "/workflows/IGVFWF6411VZLF/",
"accession": "IGVFWF6411VZLF",
"name": "Gersbach GGR ATAC-seq Pipeline",
"status": "released"
}
]
}