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IGVFFI7900YIDY

released
validated
File Set
IGVFDS9906UGWB(knockout RNA-seq: fold change over control, transcript quantifications)
Summary
GRCh38 transcript quantifications
Analysis Step Version
/analysis-step-versions/f53cadd0-3e88-4b35-ab64-8e1683998686/
File Format
tsv
Content Type
transcript quantifications
Aliases
charles-gersbach:cd8-tcells-counts-rna-seq-cas-ko-znf217
md5sum
7500be794f071888b113c8bba4f1968d
Content MD5sum
7ddb321d2db67afedd2417c6065921d8
File Size
549 KB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.nt_znf217.star2.featurecounts.counts.txt.gz

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

6 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files This File Derives From

6 items
bam
transcriptome alignments
Charles Gersbach, Duke
2.7 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.3 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.8 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.2 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.3 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.5 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fold change over control
GRCh38 fold change over control
Charles Gersbach, Duke
852 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke