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IGVFFI7900YIDY

released
validated
File Set
IGVFDS9906UGWB(CRISPR knockout RNA-seq integrating a guide (sgRNA) library targeting transcription start sites in ZNF217 and a non-targeting guide (sgRNA) library with non-targeting control)
Summary
GRCh38 transcript quantifications
Analysis Step Version
/analysis-step-versions/f53cadd0-3e88-4b35-ab64-8e1683998686/
File Format
tsv
Content Type
transcript quantifications
Aliases
charles-gersbach:cd8-tcells-counts-rna-seq-cas-ko-znf217
md5sum
7500be794f071888b113c8bba4f1968d
Content MD5sum
7ddb321d2db67afedd2417c6065921d8
File Size
549 KB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.nt_znf217.star2.featurecounts.counts.txt.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Gene counts table
file format specification

Samples

6 items
Sample Terms
Summary
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
Homo sapiens CD8-positive, alpha-beta memory T cell modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files This File Derives From

6 items
bam
transcriptome alignments
Charles Gersbach, Duke
2.7 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.3 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.8 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.2 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.3 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.5 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fold change over control
GRCh38 fold change over control
Charles Gersbach, Duke
852 KB
validated