IGVFFI7457JZZA

released
validation exempted
File Set
IGVFDS4731QGJR(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf12_fragments_10x4
md5sum
4f2f05a4b9724392dc9d5f75913b923c
Content MD5sum
41e7e57eb76272d7f3df933cef7b8b5d
File Size
6.4 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l4_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files This File Derives From

28 items
fastq
reads
Ansuman Satpathy, Stanford
5.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
3.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.9 GB
validated

Files Derived From This File

2 items
tbi
index
index of IGVFFI7457JZZA
Ansuman Satpathy, Stanford
1.9 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.3 MB
validation exempted

Attribution