{
"@context": "/terms/",
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],
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"aliases": [
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],
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"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
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"checkfiles_version": "v14",
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"content_type": "fragments",
"controlled_access": true,
"creation_timestamp": "2025-01-28T06:15:05.490389+00:00",
"derived_from": [
"/sequence-files/IGVFFI4960BHNR/",
"/sequence-files/IGVFFI5638QUNK/",
"/sequence-files/IGVFFI1547QGEW/",
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"/sequence-files/IGVFFI6068YTIW/",
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"/sequence-files/IGVFFI4351DJLD/",
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],
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"file_set_type": "intermediate analysis",
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{
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"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
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"classifications": [
"differentiated cell specimen",
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
},
{
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"status": "released",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
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"href": "/tabular-files/IGVFFI7457JZZA/@@download/IGVFFI7457JZZA.tsv.gz",
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"title": "Ansuman Satpathy, Stanford"
},
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"md5sum": "4f2f05a4b9724392dc9d5f75913b923c",
"notes": "File has # in headers, the current version of checkfiles does not allow for that but this is a valid file output from cell ranger. Therefore, we have patched the upload_status to \"validation exempted\"",
"quality_metrics": [],
"release_timestamp": "2025-03-22T00:43:30.248050+00:00",
"s3_uri": "s3://igvf-restricted-files/2025/01/28/07d0ccb6-c762-4bcc-8a02-27dc3e7ca4b7/IGVFFI7457JZZA.tsv.gz",
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"status": "released",
"submitted_by": {
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"title": "Christopher Mcginnis"
},
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"summary": "fragments",
"upload_status": "validation exempted",
"uuid": "07d0ccb6-c762-4bcc-8a02-27dc3e7ca4b7",
"validation_error_detail": "{\"tabular_file_error\": {\"schema\": null, \"error_number_limit\": 1000, \"number_of_errors\": 1000, \"extra-cell\": {\"count\": 1000, \"description\": \"This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.\", \"details\": [{\"row_number\": 52, \"field_number\": 2, \"note\": \"\"}, {\"row_number\": 52, \"field_number\": 3, \"note\": \"\"}]}, \"error_types\": [\"extra-cell\"]}}",
"workflow": {
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"name": "Satpathy Cell Ranger",
"uniform_pipeline": false
}
}