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IGVFFI6886KJDH

released
validated
File Set
IGVFDS5394QLIN(lentiMPRA: reporter genomic variant effects)
Summary
reporter genomic variant effects
Analysis Step Version
/analysis-step-versions/ea59af97-e192-40b0-9699-909a8b3baa56/
File Format
tsv
Content Type
reporter genomic variant effects
md5sum
80b7c46c76060988ea98d0a2d048d1be
Content MD5sum
789e44c36d589c4cd3aedb47d367d5b3
File Size
121 KB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/analysis_files/ASD_MPRA_PRocessedFile_SubmissionRequest/RefAlt_resout.tsv.gz"
Submitter Comment
This file was generated by MPRAflow + MPRAnalyze and does not match the standardized content_type. Mapping between the variant name and variant locations is present on the MPRA sequence designs under: IGVFFI3512DUKP, refer to the name column.

File Format Specifications

1 item
Page
Description
Type
Download
Preview
MPRAnalyze output format specification
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library

Files This File Derives From

19 items
fastq
reads
Nadav Ahituv, UCSF
397 MB
validated
fastq
reads
Nadav Ahituv, UCSF
573 MB
validated
fastq
reads
Nadav Ahituv, UCSF
732 MB
validated
fastq
reads
Nadav Ahituv, UCSF
661 MB
validated
fastq
reads
Nadav Ahituv, UCSF
738 MB
validated
fastq
reads
Nadav Ahituv, UCSF
738 MB
validated
fastq
reads
Nadav Ahituv, UCSF
337 MB
validated
fastq
reads
Nadav Ahituv, UCSF
385 MB
validated
fastq
reads
Nadav Ahituv, UCSF
662 MB
validated
fastq
reads
Nadav Ahituv, UCSF
345 MB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF