Home

IGVFFI6886KJDH

released
validated
File Set
IGVFDS5394QLIN(lentiMPRA: reporter genomic variant effects)
Summary
hg19 reporter genomic variant effects
Analysis Step Version
/analysis-step-versions/ea59af97-e192-40b0-9699-909a8b3baa56/
File Format
tsv
Content Type
reporter genomic variant effects
md5sum
80b7c46c76060988ea98d0a2d048d1be
Content MD5sum
789e44c36d589c4cd3aedb47d367d5b3
File Size
121 KB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/analysis_files/ASD_MPRA_PRocessedFile_SubmissionRequest/RefAlt_resout.tsv.gz"
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
This file was generated by MPRAflow + MPRAnalyze and does not match the standardized content_type. Mapping between the variant name and variant locations is present on the MPRA sequence designs under: IGVFFI3512DUKP, refer to the name column.
Attribution
Nadav Ahituv, UCSF

Reference Source Details

Genome Assembly
hg19

File Format Specifications

1 item
Page
Description
Type
Download
Preview
MPRAnalyze output format specification
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library

Files This File Derives From

20 items
fastq
reads
Nadav Ahituv, UCSF
397 MB
validated
fastq
reads
Nadav Ahituv, UCSF
573 MB
validated
fastq
reads
Nadav Ahituv, UCSF
732 MB
validated
fastq
reads
Nadav Ahituv, UCSF
661 MB
validated
fastq
reads
Nadav Ahituv, UCSF
738 MB
validated
fastq
reads
Nadav Ahituv, UCSF
738 MB
validated
fastq
reads
Nadav Ahituv, UCSF
337 MB
validated
fastq
reads
Nadav Ahituv, UCSF
385 MB
validated
fastq
reads
Nadav Ahituv, UCSF
662 MB
validated
fastq
reads
Nadav Ahituv, UCSF
345 MB
validated