{
"@context": "/terms/",
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],
"accession": "IGVFFI6886KJDH",
"analysis_step_version": "/analysis-step-versions/ea59af97-e192-40b0-9699-909a8b3baa56/",
"assay_titles": [
"lentiMPRA"
],
"audit": {},
"award": {
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"component": "functional characterization"
},
"barcode_map_for": [],
"content_md5sum": "789e44c36d589c4cd3aedb47d367d5b3",
"content_type": "reporter genomic variant effects",
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"creation_timestamp": "2025-01-17T14:51:28.795272+00:00",
"derived_from": [
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"/sequence-files/IGVFFI2104GOOJ/",
"/sequence-files/IGVFFI1100CEBW/",
"/sequence-files/IGVFFI5314QYSA/",
"/sequence-files/IGVFFI3330ABCC/",
"/sequence-files/IGVFFI7434RLXA/",
"/sequence-files/IGVFFI4253JNUG/",
"/sequence-files/IGVFFI8327DUVA/",
"/sequence-files/IGVFFI5528FTRW/",
"/sequence-files/IGVFFI0852UCYT/",
"/sequence-files/IGVFFI7520JNOX/",
"/sequence-files/IGVFFI9175EUYL/",
"/sequence-files/IGVFFI8506ZTML/",
"/sequence-files/IGVFFI1826XYXN/",
"/sequence-files/IGVFFI9143OBKT/",
"/sequence-files/IGVFFI9284SYXM/",
"/sequence-files/IGVFFI8179RWIF/",
"/sequence-files/IGVFFI3029BTOF/",
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],
"file_format": "tsv",
"file_format_specifications": [
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],
"file_set": {
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"accession": "IGVFDS5394QLIN",
"file_set_type": "principal analysis",
"samples": [
{
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"accession": "IGVFSM0720XHJA",
"classifications": [
"pooled cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0011020/",
"status": "released",
"term_name": "neural progenitor cell"
}
],
"status": "released",
"summary": "neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "lentiMPRA: reporter genomic variant effects"
},
"file_size": 120705,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI6886KJDH/@@download/IGVFFI6886KJDH.tsv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/nadav-ahituv/",
"title": "Nadav Ahituv, UCSF"
},
"loci_list_for": [],
"md5sum": "80b7c46c76060988ea98d0a2d048d1be",
"release_timestamp": "2025-01-28T02:01:22.218192+00:00",
"s3_uri": "s3://igvf-files/2025/01/17/5139cbcb-c692-4128-aad5-6014f9360fec/IGVFFI6886KJDH.tsv.gz",
"schema_version": "13",
"status": "released",
"submitted_by": {
"@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
"title": "Max Schubach"
},
"submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/analysis_files/ASD_MPRA_PRocessedFile_SubmissionRequest/RefAlt_resout.tsv.gz\"",
"submitter_comment": "This file was generated by MPRAflow + MPRAnalyze and does not match the standardized content_type. Mapping between the variant name and variant locations is present on the MPRA sequence designs under: IGVFFI3512DUKP, refer to the name column.",
"summary": "reporter genomic variant effects",
"upload_status": "validated",
"uuid": "5139cbcb-c692-4128-aad5-6014f9360fec",
"workflow": {
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"name": "MPRAnalyze Variant Annotation",
"uniform_pipeline": false
}
}