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IGVFFI6441PWQZ

released
validated
File Set
IGVFDS0635KHHW(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered fragments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bed
Content Type
fragments
Aliases
buenrostro-bernstein:IGVFDS0635KHHW_fragments
md5sum
55ba33ad65cbc0d3724bd37355a26595
Content MD5sum
927a4b08ebc2c109b8eded46e7629bfa
File Size
423 MB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/225aed6b-71f4-42ae-989a-45619457db1e/call-atac/wf_atac/0187a2d3-be98-4679-aa42-6e9d43d160ba/call-generate_fragments/SS-PKR-130.fragments.tsv.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Reference Source Details

Genome Assembly
GRCm39

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of fragment file generated by https://github.com/IGVF/single-cell-pipeline
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)

Files This File Derives From

18 items
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
fastq
reads
Jason Buenrostro, Broad
635 MB
validated
fastq
reads
Jason Buenrostro, Broad
121 MB
validated
fastq
reads
Jason Buenrostro, Broad
224 MB
validated
fastq
reads
Jason Buenrostro, Broad
633 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tbi
index
index of IGVFFI6441PWQZ
Jason Buenrostro, Broad
557 KB
validated