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IGVFDS0635KHHW

released
Aliases
buenrostro-bernstein:AnalysisSet_BioSam-4561_SS-PKR-130
File Set Type
intermediate analysis
Summary
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
Samples
Mus musculus brain tissue, cellular sub pool(s): SS-PKR 130
Protocols
Attribution
Jason Buenrostro, Broad

Files

6 items
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.0 GB
uniformly processed
validated
tbi
index
index of IGVFFI6441PWQZ
Jason Buenrostro, Broad
557 KB
uniformly processed
validated
bai
index
index of IGVFFI0876EPIM
Jason Buenrostro, Broad
2.2 MB
uniformly processed
validated
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
423 MB
uniformly processed
validated
tar
kallisto single cell RNAseq output
unfiltered cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
2.6 GB
uniformly processed
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
467 MB
uniformly processed
validated

File Association Graph

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File Set
File
AnalysisSet
MeasurementSet

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)

Donors

1 item
Accession
Aliases
Sex
Taxa
  • bradley-bernstein:Donor 1503
  • buenrostro-bernstein:Donor 1503
female
Mus musculus

MeasurementSet Input File Sets

6 items
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell ATAC-seq (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)
single-cell RNA sequencing assay (SHARE-seq)
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 130)