IGVFFI5547HSOB

released
validation exempted
File Set
IGVFDS9170BNTS(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf3_fragments_10x1
md5sum
bdd9f8b9ca3aeda84c62dd2e25cfc6d3
Content MD5sum
9ad1f240e2a8b0db6398cacdfe579764
File Size
3.1 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf3/e3l1_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
4.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
9.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
9.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.1 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.0 MB
validation exempted
tbi
index
index of IGVFFI5547HSOB
Ansuman Satpathy, Stanford
1.3 MB
validated

Attribution