IGVFFI3289WICA

released

validated

File Set

IGVFDS9143TFRW(CRISPR interference FACS screen targeting CCR7: fold change over control, guide quantifications)

Summary

custom assembly guide quantifications

Analysis Step Version

/analysis-step-versions/886b365e-3105-424a-8972-7476238b54d7/

File Format

csv

Content Type

guide quantifications

Aliases

charles-gersbach:cd8-tcells-guide-counts-crispri-ccr7

md5sum

3d11ec02c679a13b3bc7f61da0ecc7cb

Content MD5sum

903e8e9efa20a31850a542e0b65849e7

File Size

40 KB

Submitted File Name

/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/CRISPRi.TF.CCR7.counts.table.csv.gz

Reference Source Details

Genome Assembly

custom

File Format Specifications

1 item

Page

Description

Type

Download

Preview

gRNA counts table

file format specification

gRNA counts table file format specification.pdf

Samples

4 items

Sample Terms

Summary

IGVFSM1205VMNO

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 90-100% expression of CCR7) modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM2207SJEN

PrimaryCell

CD8-positive, alpha-beta memory T cell

IGVFSM7413JCSK

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of CCR7) modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM9398LTWW

PrimaryCell

CD8-positive, alpha-beta memory T cell

CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of CCR7) modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)