Home

IGVFFI3030OKFY

released
validation exempted
File Set
IGVFDS5833SGWM(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
GRCh38 reporter variants
Analysis Step Version
/analysis-step-versions/c8de4554-6fda-4373-aa41-5574220df999/
File Format
tsv
Content Type
reporter variants
Aliases
tim-reddy:starr-seq-bird-input-file-P013
md5sum
2a8ca5b94b1be3d7ec0fba92cf7585c2
Content MD5sum
2ba7bdf2ccaf17044925dad5e5b13a9b
File Size
37 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_input.spdi.pool13.txt.gz
Checkfiles Version
v16
Attribution
Bill Majoros, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
BIRD input file format as described in http://www.geneprediction.org/bird
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
bam
alignments
Tim Reddy, Duke
6.8 GB
validated
bam
alignments
Tim Reddy, Duke
9.8 GB
validated

Files Derived From This File

2 items
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
88 MB
validated
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
192 MB
validated