IGVFFI3030OKFY

released
validation exempted
{
    "@context": "/terms/",
    "@id": "/tabular-files/IGVFFI3030OKFY/",
    "@type": [
        "TabularFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3030OKFY",
    "aliases": [
        "tim-reddy:starr-seq-bird-input-file-P013"
    ],
    "analysis_step_version": "/analysis-step-versions/c8de4554-6fda-4373-aa41-5574220df999/",
    "assay_titles": [
        "SUPERSTARR"
    ],
    "assembly": "GRCh38",
    "audit": {},
    "award": {
        "@id": "/awards/HG011967/",
        "component": "predictive modeling"
    },
    "barcode_map_for": [],
    "checkfiles_version": "v16",
    "content_md5sum": "2ba7bdf2ccaf17044925dad5e5b13a9b",
    "content_type": "reporter variants",
    "controlled_access": false,
    "creation_timestamp": "2025-02-07T15:58:27.439291+00:00",
    "derived_from": [
        "/alignment-files/IGVFFI2049ZLGM/",
        "/alignment-files/IGVFFI8239JDGA/"
    ],
    "file_format": "tsv",
    "file_format_specifications": [
        "/documents/7461bdb0-0f75-4985-b207-1f045913edbf/"
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS5833SGWM/",
        "@type": [
            "AnalysisSet",
            "FileSet",
            "Item"
        ],
        "accession": "IGVFDS5833SGWM",
        "file_set_type": "principal analysis",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM3448XLHJ/",
                "@type": [
                    "InVitroSystem",
                    "Biosample",
                    "Sample",
                    "Item"
                ],
                "accession": "IGVFSM3448XLHJ",
                "classifications": [
                    "cell line"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0002067/",
                        "status": "released",
                        "term_name": "K562"
                    }
                ],
                "status": "released",
                "summary": "Homo sapiens (female) K562 cell line transfected with a reporter library",
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants"
    },
    "file_size": 37140312,
    "gene_list_for": [],
    "href": "/tabular-files/IGVFFI3030OKFY/@@download/IGVFFI3030OKFY.tsv.gz",
    "input_file_for": [
        "/tabular-files/IGVFFI6698WXZQ/",
        "/tabular-files/IGVFFI9415RNIO/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/bill-majoros/",
        "title": "Bill Majoros, Duke"
    },
    "loci_list_for": [],
    "md5sum": "2a8ca5b94b1be3d7ec0fba92cf7585c2",
    "quality_metrics": [],
    "release_timestamp": "2025-04-09T16:39:55.592809+00:00",
    "s3_uri": "s3://igvf-files/2025/02/07/c4b9d67c-1b2b-4282-b577-e8b339f0deee/IGVFFI3030OKFY.tsv.gz",
    "schema_version": "15",
    "status": "released",
    "submitted_by": {
        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
        "title": "Alejandro Barrera"
    },
    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_input.spdi.pool13.txt.gz",
    "summary": "GRCh38 reporter variants",
    "upload_status": "validation exempted",
    "uuid": "c4b9d67c-1b2b-4282-b577-e8b339f0deee",
    "workflow": {
        "@id": "/workflows/IGVFWF6957ZNII/",
        "name": "SUPERSTARR Pipeline",
        "uniform_pipeline": false
    }
}