IGVFFI2207HLUJ

released

validated

File Set

IGVFDS2261TIMI(CRISPR activation FACS screen targeting IL2RA: alignments, fold change over control, guide quantifications)

Summary

custom assembly fold change over control

Analysis Step Version

/analysis-step-versions/6a1d20c7-c92f-47d6-8e3b-5c74b3e8eed2/

File Format

tsv

Content Type

fold change over control

Aliases

charles-gersbach:jurkats-guide-quantifications-crispra-vp64-il2ra

md5sum

c657eba469c8190ce7d70e7fe05d9214

Content MD5sum

16a2be7bb6b739f27ea452b2c301f047

File Size

14 KB

Submitted File Name

/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/T1C_IL2RA_CRISPRa1xVP64_screen.simple.v2.txt.gz

Checkfiles Version

Legacy version of checkfiles

Reference Source Details

Genome Assembly

custom

File Format Specifications

1 item

Page

Description

Type

Download

Preview

DESeq2 results

file format specification

DESeq2 results file format specification.pdf

Samples

6 items

Sample Terms

Summary

IGVFSM1480DJBL

InVitroSystem

Jurkat

Jurkat cell line, Homo sapiens (sorting details: FACS bin for 0-10% expression of IL2RA ) modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM2737ATVK

InVitroSystem

Jurkat

Jurkat cell line, Homo sapiens (sorting details: FACS bin for 90-100% expression of IL2RA ) modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM3148FRBY

InVitroSystem

Jurkat

Jurkat cell line, Homo sapiens (sorting details: FACS bin for 90-100% expression of IL2RA ) modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM3606VJWU

InVitroSystem

Jurkat

Jurkat cell line, Homo sapiens (sorting details: FACS bin for 0-10% expression of IL2RA ) modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM4401YRWQ

InVitroSystem

Jurkat

Jurkat cell line, Homo sapiens (sorting details: FACS bin for 0-10% expression of IL2RA ) modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)

IGVFSM7748IVLZ

InVitroSystem

Jurkat

Jurkat cell line, Homo sapiens (sorting details: FACS bin for 90-100% expression of IL2RA ) modified with CRISPRa Sa-dCas9-VP64, transduced (lentivirus) with a guide library (MOI of 0.4)