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IGVFFI2071KQLY

released
validated
File Set
IGVFDS7239LNZO(knockout RNA-seq: fold change over control, transcript quantifications)
Summary
GRCh38 transcript quantifications
Analysis Step Version
/analysis-step-versions/f53cadd0-3e88-4b35-ab64-8e1683998686/
File Format
tsv
Content Type
transcript quantifications
Aliases
charles-gersbach:cd8-tcells-counts-rna-seq-cas-ko-gata3
md5sum
f4482e1e6450fd9dc6c7a74c157d7d96
Content MD5sum
a518e52d75421a799fc77f8c24d54fb5
File Size
547 KB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.pSM73.nt_gata3.star2.featurecounts.counts.txt.gz

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

6 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files This File Derives From

6 items
bam
transcriptome alignments
Charles Gersbach, Duke
2.2 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.7 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.1 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.3 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.2 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
2.5 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fold change over control
GRCh38 fold change over control
Charles Gersbach, Duke
885 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke