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IGVFFI1836KEVI

released
validated
File Set
IGVFDS8415FVDT(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered fragments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bed
Content Type
fragments
Aliases
buenrostro-bernstein:IGVFDS8415FVDT_fragments
md5sum
59fa01db9beef443b7729a290d8a0ba9
Content MD5sum
617a3bbbe38c86c8df8b76978e5263dd
File Size
431 MB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/a509d7e4-f8d8-444a-b4e7-d1e6cb892d9f/call-atac/wf_atac/cb5d328e-fa06-4aea-8cea-4abecf547577/call-generate_fragments/SS-PKR-129.fragments.tsv.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Reference Source Details

Genome Assembly
GRCm39

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of fragment file generated by https://github.com/IGVF/single-cell-pipeline
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files This File Derives From

18 items
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
fastq
reads
Jason Buenrostro, Broad
1.2 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.2 GB
validated
fastq
reads
Jason Buenrostro, Broad
641 MB
validated
fastq
reads
Jason Buenrostro, Broad
411 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tbi
index
index of IGVFFI1836KEVI
Jason Buenrostro, Broad
559 KB
validated