IGVFFI1836KEVI

1{
2    "@context": "/terms/",
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9    "accession": "IGVFFI1836KEVI",
10    "aliases": [
11        "buenrostro-bernstein:IGVFDS8415FVDT_fragments"
12    ],
13    "analysis_step_version": "/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "assembly": "GRCm39",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG011986/",
21        "component": "mapping"
22    },
23    "barcode_map_for": [],
24    "checkfiles_version": "v20",
25    "content_md5sum": "617a3bbbe38c86c8df8b76978e5263dd",
26    "content_type": "fragments",
27    "controlled_access": false,
28    "creation_timestamp": "2025-03-27T01:17:37.372859+00:00",
29    "derived_from": [
30        "/sequence-files/IGVFFI1847DJVR/",
31        "/sequence-files/IGVFFI9218BUCK/",
32        "/sequence-files/IGVFFI5944WRFT/",
33        "/sequence-files/IGVFFI5709RHHR/",
34        "/sequence-files/IGVFFI6393JXIX/",
35        "/sequence-files/IGVFFI6331OWCQ/",
36        "/sequence-files/IGVFFI0003RJLQ/",
37        "/sequence-files/IGVFFI1801NWGU/",
38        "/sequence-files/IGVFFI9706EHIQ/",
39        "/sequence-files/IGVFFI5183LDFN/",
40        "/sequence-files/IGVFFI9528JABE/",
41        "/sequence-files/IGVFFI5954LBNR/",
42        "/configuration-files/IGVFFI9559QEAH/",
43        "/configuration-files/IGVFFI9026GHLA/",
44        "/configuration-files/IGVFFI7473ZEJG/",
45        "/configuration-files/IGVFFI9086WGIT/",
46        "/configuration-files/IGVFFI2269ULRS/",
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53            "description": "Specification of fragment file generated by https://github.com/IGVF/single-cell-pipeline"
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64        "accession": "IGVFDS8415FVDT",
65        "data_use_limitation_summaries": [
66            "no certificate"
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68        "file_set_type": "intermediate analysis",
69        "samples": [
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71                "@id": "/tissues/IGVFSM3932SXVT/",
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79                "classifications": [
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82                "sample_terms": [
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84                        "@id": "/sample-terms/UBERON_0000955/",
85                        "status": "released",
86                        "term_name": "brain"
87                    }
88                ],
89                "status": "released",
90                "summary": "Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)",
91                "taxa": "Mus musculus"
92            }
93        ],
94        "status": "released",
95        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)"
96    },
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98    "filtered": false,
99    "gene_list_for": [],
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101    "input_file_for": [
102        "/index-files/IGVFFI7184SQPW/"
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104    "integrated_in": [],
105    "lab": {
106        "@id": "/labs/jason-buenrostro/",
107        "title": "Jason Buenrostro, Broad"
108    },
109    "loci_list_for": [],
110    "md5sum": "59fa01db9beef443b7729a290d8a0ba9",
111    "primer_design_for": [],
112    "quality_metrics": [
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114    ],
115    "release_timestamp": "2025-05-07T20:34:55.631513+00:00",
116    "s3_uri": "s3://igvf-files/2025/03/27/652ad223-0f79-4a64-b1b8-df9d2e884250/IGVFFI1836KEVI.bed.gz",
117    "schema_version": "15",
118    "status": "released",
119    "submitted_by": {
120        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
121        "title": "Siddarth Wekhande"
122    },
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124    "summary": "GRCm39 unfiltered fragments",
125    "upload_status": "validated",
126    "uuid": "652ad223-0f79-4a64-b1b8-df9d2e884250",
127    "workflow": {
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129        "name": "igvf single cell uniform pipeline",
130        "uniform_pipeline": true
131    }
132}