IGVFFI1533ZRUW

released

validation exempted

File Set

IGVFDS7527QIIX(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf9_peaks_10x1

md5sum

bb12cd882054f2392601ec14c5681bca

Content MD5sum

ddbc1b834fe66b4f5df0a9d6dc38634f

File Size

1.7 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf9/e9l1_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum ddbc1b834fe66b4f5df0a9d6dc38634f does not match newly calculated md5sum bb12cd882054f2392601ec14c5681bca.", "validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/92892833-b3a4-4018-9c9b-3925fe0ac66b/IGVFFI1533ZRUW.bed.gz, line=202917]: chrom KI270728.1 not found [KI270728.1\t232242\t233174]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9678IFHW

MultiplexedSample

B cell

multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples