IGVFFI1533ZRUW

released
validation exempted
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI1533ZRUW/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
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9    "accession": "IGVFFI1533ZRUW",
10    "aliases": [
11        "ansuman-satpathy:igvf9_peaks_10x1"
12    ],
13    "analysis_step_version": "/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "assembly": "GRCh38",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG011972/",
21        "component": "functional characterization"
22    },
23    "barcode_map_for": [],
24    "checkfiles_version": "v14",
25    "content_md5sum": "ddbc1b834fe66b4f5df0a9d6dc38634f",
26    "content_type": "peaks",
27    "controlled_access": true,
28    "creation_timestamp": "2025-01-28T06:02:13.344356+00:00",
29    "derived_from": [
30        "/tabular-files/IGVFFI6893BJEL/"
31    ],
32    "file_format": "bed",
33    "file_format_specifications": [
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36    "file_format_type": "bed3",
37    "file_set": {
38        "@id": "/analysis-sets/IGVFDS7527QIIX/",
39        "@type": [
40            "AnalysisSet",
41            "FileSet",
42            "Item"
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44        "accession": "IGVFDS7527QIIX",
45        "file_set_type": "intermediate analysis",
46        "samples": [
47            {
48                "@id": "/multiplexed-samples/IGVFSM9678IFHW/",
49                "@type": [
50                    "MultiplexedSample",
51                    "Sample",
52                    "Item"
53                ],
54                "accession": "IGVFSM9678IFHW",
55                "classifications": [
56                    "differentiated cell specimen",
57                    "multiplexed sample"
58                ],
59                "disease_terms": [],
60                "modifications": [],
61                "sample_terms": [
62                    {
63                        "@id": "/sample-terms/CL_0000236/",
64                        "status": "released",
65                        "term_name": "B cell"
66                    }
67                ],
68                "status": "released",
69                "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples",
70                "taxa": "Homo sapiens",
71                "treatments": []
72            }
73        ],
74        "status": "released",
75        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
76    },
77    "file_size": 1669821,
78    "gene_list_for": [],
79    "href": "/tabular-files/IGVFFI1533ZRUW/@@download/IGVFFI1533ZRUW.bed.gz",
80    "input_file_for": [],
81    "integrated_in": [],
82    "lab": {
83        "@id": "/labs/ansuman-satpathy/",
84        "title": "Ansuman Satpathy, Stanford"
85    },
86    "loci_list_for": [],
87    "md5sum": "bb12cd882054f2392601ec14c5681bca",
88    "quality_metrics": [],
89    "release_timestamp": "2025-03-22T00:41:39.828903+00:00",
90    "s3_uri": "s3://igvf-restricted-files/2025/01/28/92892833-b3a4-4018-9c9b-3925fe0ac66b/IGVFFI1533ZRUW.bed.gz",
91    "schema_version": "15",
92    "status": "released",
93    "submitted_by": {
94        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
95        "title": "Christopher Mcginnis"
96    },
97    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf9/e9l1_peaks.bed",
98    "summary": "GRCh38 peaks",
99    "upload_status": "validation exempted",
100    "uuid": "92892833-b3a4-4018-9c9b-3925fe0ac66b",
101    "validation_error_detail": "{\"md5sum\": \"original md5sum ddbc1b834fe66b4f5df0a9d6dc38634f does not match newly calculated md5sum bb12cd882054f2392601ec14c5681bca.\", \"validate_files\": \"Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/92892833-b3a4-4018-9c9b-3925fe0ac66b/IGVFFI1533ZRUW.bed.gz, line=202917]: chrom KI270728.1 not found [KI270728.1\\t232242\\t233174]\\nAborting ... found error.\"}",
102    "workflow": {
103        "@id": "/workflows/IGVFWF1453HVEC/",
104        "name": "Satpathy Cell Ranger",
105        "uniform_pipeline": false
106    }
107}