Home

IGVFFI0796UODY

released
validated
File Set
IGVFDS4607KRIY(CRISPR base editing FlowFISH screen targeting NFKBIA integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure)
Summary
guide quantifications
Analysis Step Version
/analysis-step-versions/c0fbe877-fa6c-423b-8d56-e600bf8e2859/
File Format
csv
Content Type
guide quantifications
Aliases
guillaume-lettre:BP_mageck_ABE8_flowfish_mapped_counts
md5sum
af70c7e70c8a643f40d918fb719fb912
Content MD5sum
e92cc6c5f5eb55cf59edb5cf7706aeb4
File Size
425 KB
Submitted File Name
/home/lokensin/projects/rrg-glettre/lokensin/IGVF/Submission_DACC_20250304/BP_Pilot_BE_flowfish_Mageck_count.txt.gz
Checkfiles Version
v17
Attribution
Guillaume Lettre, MHI

Samples

32 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library

Files This File Derives From

64 items
fastq
reads
Guillaume Lettre, MHI
1.6 GB
validated
fastq
reads
Guillaume Lettre, MHI
1.1 GB
validated
fastq
reads
Guillaume Lettre, MHI
1.2 GB
validated
fastq
reads
Guillaume Lettre, MHI
1.1 GB
validated
fastq
reads
Guillaume Lettre, MHI
1.1 GB
validated
fastq
reads
Guillaume Lettre, MHI
1.7 GB
validated
fastq
reads
Guillaume Lettre, MHI
1.3 GB
validated
fastq
reads
Guillaume Lettre, MHI
1.1 GB
validated
fastq
reads
Guillaume Lettre, MHI
1.0 GB
validated
fastq
reads
Guillaume Lettre, MHI
1.3 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
guide quantifications
guide quantifications
Guillaume Lettre, MHI
96 KB
validated