{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI0796UODY/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI0796UODY",
"aliases": [
"guillaume-lettre:BP_mageck_ABE8_flowfish_mapped_counts"
],
"analysis_step_version": "/analysis-step-versions/c0fbe877-fa6c-423b-8d56-e600bf8e2859/",
"assay_titles": [
"CRISPR FlowFISH screen"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI0796UODY](/tabular-files/IGVFFI0796UODY/) has in progress subobject sequence file [IGVFFI4027XVXN](/sequence-files/IGVFFI4027XVXN/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI0796UODY/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI0796UODY](/tabular-files/IGVFFI0796UODY/) has in progress subobject sequence file [IGVFFI7071JWIJ](/sequence-files/IGVFFI7071JWIJ/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI0796UODY/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI0796UODY](/tabular-files/IGVFFI0796UODY/) has in progress subobject document [a0137923-9bc3-4c2e-a9a6-250156cd1c39](/documents/a0137923-9bc3-4c2e-a9a6-250156cd1c39/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI0796UODY/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI0796UODY](/tabular-files/IGVFFI0796UODY/) has in progress subobject sequence file [IGVFFI4664TFAK](/sequence-files/IGVFFI4664TFAK/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI0796UODY/"
},
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI0796UODY](/tabular-files/IGVFFI0796UODY/) has in progress subobject sequence file [IGVFFI9006SYHA](/sequence-files/IGVFFI9006SYHA/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI0796UODY/"
}
]
},
"award": {
"@id": "/awards/HG012010/",
"component": "functional characterization"
},
"barcode_map_for": [],
"checkfiles_version": "v17",
"content_md5sum": "e92cc6c5f5eb55cf59edb5cf7706aeb4",
"content_type": "guide quantifications",
"controlled_access": false,
"creation_timestamp": "2025-03-04T21:39:10.837662+00:00",
"derived_from": [
"/sequence-files/IGVFFI7552CCAZ/",
"/sequence-files/IGVFFI2662SXDU/",
"/sequence-files/IGVFFI5054PRYM/",
"/sequence-files/IGVFFI2628HLKX/",
"/sequence-files/IGVFFI3391ABDC/",
"/sequence-files/IGVFFI3174IKXJ/",
"/sequence-files/IGVFFI3096XAFQ/",
"/sequence-files/IGVFFI7453TXLZ/",
"/sequence-files/IGVFFI2710LIDW/",
"/sequence-files/IGVFFI0609QFGE/",
"/sequence-files/IGVFFI8250ESSA/",
"/sequence-files/IGVFFI2632AECU/",
"/sequence-files/IGVFFI7343WJNQ/",
"/sequence-files/IGVFFI2421LZJJ/",
"/sequence-files/IGVFFI1149JBHS/",
"/sequence-files/IGVFFI1983EBVR/",
"/sequence-files/IGVFFI9031CBUZ/",
"/sequence-files/IGVFFI8493COOL/",
"/sequence-files/IGVFFI8769LCSF/",
"/sequence-files/IGVFFI9527IXYI/",
"/sequence-files/IGVFFI7148IIAD/",
"/sequence-files/IGVFFI3175NXWU/",
"/sequence-files/IGVFFI2379ZPPS/",
"/sequence-files/IGVFFI3065TFPS/",
"/sequence-files/IGVFFI6566IPVQ/",
"/sequence-files/IGVFFI2793GTVA/",
"/sequence-files/IGVFFI9094HXMD/",
"/sequence-files/IGVFFI2535QFML/",
"/sequence-files/IGVFFI6548PVIT/",
"/sequence-files/IGVFFI4843OJKK/",
"/sequence-files/IGVFFI5859LZRA/",
"/sequence-files/IGVFFI7477MVDT/",
"/sequence-files/IGVFFI6191QKMP/",
"/sequence-files/IGVFFI4508XTQM/",
"/sequence-files/IGVFFI5935HRXT/",
"/sequence-files/IGVFFI7992PMSX/",
"/sequence-files/IGVFFI2056SIMI/",
"/sequence-files/IGVFFI9445FKJB/",
"/sequence-files/IGVFFI7872WTHA/",
"/sequence-files/IGVFFI2562ZALC/",
"/sequence-files/IGVFFI9118YXXN/",
"/sequence-files/IGVFFI6502ESPA/",
"/sequence-files/IGVFFI8476OKWF/",
"/sequence-files/IGVFFI7150FUMD/",
"/sequence-files/IGVFFI8600FSLJ/",
"/sequence-files/IGVFFI0121XAZF/",
"/sequence-files/IGVFFI4668BAUT/",
"/sequence-files/IGVFFI3486PWLP/",
"/sequence-files/IGVFFI4360YJQK/",
"/sequence-files/IGVFFI9558HPGH/",
"/sequence-files/IGVFFI6756ZEYX/",
"/sequence-files/IGVFFI0692IJAJ/",
"/sequence-files/IGVFFI6901GTJX/",
"/sequence-files/IGVFFI6384ZRYY/",
"/sequence-files/IGVFFI6220RROK/",
"/sequence-files/IGVFFI3004YRWJ/",
"/sequence-files/IGVFFI6159WUHC/",
"/sequence-files/IGVFFI2298OELD/",
"/sequence-files/IGVFFI2367TPKS/",
"/sequence-files/IGVFFI3463BDEE/",
"/sequence-files/IGVFFI5794UGCC/",
"/sequence-files/IGVFFI2779PUOG/",
"/sequence-files/IGVFFI6013BAKU/",
"/sequence-files/IGVFFI4672VCMI/",
"/sequence-files/IGVFFI4027XVXN/",
"/sequence-files/IGVFFI7071JWIJ/",
"/sequence-files/IGVFFI4664TFAK/",
"/sequence-files/IGVFFI9006SYHA/"
],
"file_format": "csv",
"file_format_specifications": [
"/documents/a0137923-9bc3-4c2e-a9a6-250156cd1c39/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS4607KRIY/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS4607KRIY",
"file_set_type": "principal analysis",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM1818NHFR/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1818NHFR",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7877ZYHW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7877ZYHW",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3249UZLI/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3249UZLI",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0881XMAX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0881XMAX",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2712ASPC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2712ASPC",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9758ABJG/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9758ABJG",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0181HCPU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0181HCPU",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9620KONC/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9620KONC",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3485HFQL/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3485HFQL",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3511SIJR/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM3511SIJR",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4512MZFS/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4512MZFS",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8807OYTD/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8807OYTD",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4008SDAU/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4008SDAU",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5327UESI/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5327UESI",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1797FSOQ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM1797FSOQ",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5856XXQY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5856XXQY",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2459KZOY/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2459KZOY",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7779QVQI/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7779QVQI",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5045AUZI/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5045AUZI",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4898DKFN/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4898DKFN",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0863YUZH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM0863YUZH",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6626NXQK/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6626NXQK",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2339WXFJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2339WXFJ",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5374UOFB/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5374UOFB",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 0-20% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6210QEAT/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6210QEAT",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM4252CACF/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM4252CACF",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5187DULX/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5187DULX",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8575ZJQZ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM8575ZJQZ",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9413LAWR/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM9413LAWR",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7791MNAW/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM7791MNAW",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2429BZNJ/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM2429BZNJ",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 80-100% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6979SEVH/",
"@type": [
"InVitroSystem",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM6979SEVH",
"classifications": [
"cell line"
],
"modifications": [
{
"@id": "/crispr-modifications/53d408bd-fa43-4ed3-be6d-db4ab82f7820/",
"modality": "base editing",
"status": "in progress",
"summary": "CRISPR base editing SpRY-ABE8e"
}
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 60-80% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library",
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "CRISPR base editing FlowFISH screen targeting NFKBIA: guide quantifications"
},
"file_size": 424899,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI0796UODY/@@download/IGVFFI0796UODY.csv.gz",
"input_file_for": [
"/tabular-files/IGVFFI3524CDMD/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/guillaume-lettre/",
"title": "Guillaume Lettre, MHI"
},
"loci_list_for": [],
"md5sum": "af70c7e70c8a643f40d918fb719fb912",
"quality_metrics": [],
"release_timestamp": "2025-03-07T23:07:11.970303+00:00",
"s3_uri": "s3://igvf-files/2025/03/04/294bf63a-750e-47c5-95bf-46c154a89523/IGVFFI0796UODY.csv.gz",
"schema_version": "15",
"status": "released",
"submitted_by": {
"@id": "/users/005a9a1c-02ab-408f-90a9-d6bea5c36d05/",
"title": "Ken Sin Lo"
},
"submitted_file_name": "/home/lokensin/projects/rrg-glettre/lokensin/IGVF/Submission_DACC_20250304/BP_Pilot_BE_flowfish_Mageck_count.txt.gz",
"summary": "guide quantifications",
"upload_status": "validated",
"uuid": "294bf63a-750e-47c5-95bf-46c154a89523",
"workflow": {
"@id": "/workflows/IGVFWF7224ABWD/",
"name": "MAGeCK CRISPR screen workflow",
"uniform_pipeline": false
}
}