IGVFFI0462IJUO

released

validated

File Set

IGVFDS8114MQYA(CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus and a non-targeting guide (sgRNA) library)

Summary

GRCh38 bin paired count

Analysis Step Version

/analysis-step-versions/7a065c7f-9076-4e55-ae0a-8c0ae1b1c13e/

File Format

tsv

Content Type

bin paired count

Aliases

charles-gersbach:tabular-file-crispri-count

md5sum

9120ffebea4780164539f0f3ea534890

Content MD5sum

8c842b9af2aaffd3b23029d7c6ac02c4

File Size

1.7 KB

Submitted File Name

/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/CRISPRi.Region3_vs_nontarget_Union_10kb_count_mat.tsv.gz

Checkfiles Version

Legacy version of checkfiles

Attribution

Charles Gersbach, Duke

(

HG012053 — Charles Gersbach

)

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Standardized File Format

Preview

Gene counts table

file format specification

Gene counts table file format specification_HiCAR.pdf

Samples

4 items

Sample Terms

Summary

IGVFSM2124WYGG

InVitroSystem

GM25256 (WTC-11)

Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library

IGVFSM5947VCGI

InVitroSystem

GM25256 (WTC-11)

Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library

IGVFSM7879FDUK

InVitroSystem

GM25256 (WTC-11)

Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library

IGVFSM9350REVJ

InVitroSystem

GM25256 (WTC-11)

Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library