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IGVFFI0462IJUO

released
validated
File Set
IGVFDS8114MQYA(CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus and a non-targeting guide (sgRNA) library)
Summary
GRCh38 bin paired count
Analysis Step Version
/analysis-step-versions/7a065c7f-9076-4e55-ae0a-8c0ae1b1c13e/
File Format
tsv
Content Type
bin paired count
Aliases
charles-gersbach:tabular-file-crispri-count
md5sum
9120ffebea4780164539f0f3ea534890
Content MD5sum
8c842b9af2aaffd3b23029d7c6ac02c4
File Size
1.7 KB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/CRISPRi.Region3_vs_nontarget_Union_10kb_count_mat.tsv.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Gene counts table
file format specification

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library

Files This File Derives From

4 items
cool
contact matrix
Charles Gersbach, Duke
22 MB
validated
cool
contact matrix
Charles Gersbach, Duke
28 MB
validated
cool
contact matrix
Charles Gersbach, Duke
29 MB
validated
cool
contact matrix
Charles Gersbach, Duke
33 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
differential chromatin contact quantifications
GRCh38 differential chromatin contact quantifications
Charles Gersbach, Duke
7.9 KB
validated