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IGVFFI0407NUDH

released
validated
File Set
IGVFDS2649QXJV(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
cell hashing barcodes
Analysis Step Version
/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/
File Format
tsv
Content Type
cell hashing barcodes
Aliases
ansuman-satpathy:igvf4_multiseq_count_matrix_10x1
md5sum
ad778a20c589803d43f34136a7011421
Content MD5sum
568de9534d90d757a7f1f3413a6918d6
File Size
1.2 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e4l1_tag_mtx.tsv.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
MULTI-seq barcode count matrix definition
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
849 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
551 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
223 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
384 MB
validated
fastq
reads
Ansuman Satpathy, Stanford
3.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
297 MB
validated