IGVFFI0407NUDH

released
validated
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    "accession": "IGVFFI0407NUDH",
    "aliases": [
        "ansuman-satpathy:igvf4_multiseq_count_matrix_10x1"
    ],
    "analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "barcode_map_for": [],
    "checkfiles_version": "v16",
    "content_md5sum": "568de9534d90d757a7f1f3413a6918d6",
    "content_type": "cell hashing barcodes",
    "controlled_access": false,
    "creation_timestamp": "2025-02-19T23:30:33.648258+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI8215HTLX/",
        "/sequence-files/IGVFFI4354LGMV/",
        "/sequence-files/IGVFFI0643QFDR/",
        "/sequence-files/IGVFFI7539KTAI/",
        "/sequence-files/IGVFFI4062LYWK/",
        "/sequence-files/IGVFFI5208TYZV/",
        "/sequence-files/IGVFFI4493FMPP/",
        "/sequence-files/IGVFFI6117KXKS/"
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    "file_format": "tsv",
    "file_format_specifications": [
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        "file_set_type": "intermediate analysis",
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                "accession": "IGVFSM8594ZCZM",
                "classifications": [
                    "cell line",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples",
                "taxa": "Homo sapiens",
                "treatments": [
                    {
                        "@id": "/treatments/2987f643-86dc-4113-af7e-d4b5d162b5c8/",
                        "purpose": "differentiation",
                        "status": "in progress",
                        "summary": "Treatment of 0.025 ng/mL acetylated low density lipoprotein for 1 day",
                        "treatment_term_name": "acetylated low density lipoprotein"
                    },
                    {
                        "@id": "/treatments/729630f8-aa05-47f5-9cba-ee7a264da593/",
                        "purpose": "differentiation",
                        "status": "in progress",
                        "summary": "Treatment of 50 ng/mL interleukin 4 for 1 day",
                        "treatment_term_name": "interleukin 4"
                    },
                    {
                        "@id": "/treatments/ae8065d2-85f3-498e-b4f2-01a38756d48e/",
                        "purpose": "differentiation",
                        "status": "in progress",
                        "summary": "Treatment of 20 ng/mL interferon gamma for 1 day",
                        "treatment_term_name": "interferon gamma"
                    },
                    {
                        "@id": "/treatments/bec71d5e-97ef-489a-acb7-5336691b6c39/",
                        "purpose": "differentiation",
                        "status": "in progress",
                        "summary": "Treatment of 100 ng/mL macrophage colony-stimulating factor 1 for 7 days",
                        "treatment_term_name": "macrophage colony-stimulating factor 1"
                    }
                ]
            }
        ],
        "status": "released",
        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
    },
    "file_size": 1150129,
    "gene_list_for": [],
    "href": "/tabular-files/IGVFFI0407NUDH/@@download/IGVFFI0407NUDH.tsv.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "ad778a20c589803d43f34136a7011421",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T06:04:24.816393+00:00",
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    "schema_version": "15",
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e4l1_tag_mtx.tsv.gz",
    "summary": "cell hashing barcodes",
    "upload_status": "validated",
    "uuid": "5e76e99c-e847-40df-b017-19a61f28984f",
    "workflow": {
        "@id": "/workflows/IGVFWF1453HVEC/",
        "name": "Satpathy Cell Ranger",
        "uniform_pipeline": false
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}