Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
SequenceFile
/
IGVFFI4373RWTV
IGVFFI4373RWTV
released
validated
Json view
File Set
IGVFDS6946BUZB
(Parse SPLiT-seq)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
md5sum
dc802213c02fe80066b5919e60dffb83
Content MD5sum
3d77da1c3005350f3c13801009fc5fd3
File Size
12 GB
Submitted File Name
igvf_b01/next1/igvf_b01_B04_D_next_N1_R1.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AAC2L2NHV
Lane
1
Sequencing Kit
NextSeq 1000/2000 P3 Reagent Kit
Illumina Read Type
R1
Average Read Length
140
Read Count
158630723
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9603DIDI
MultiplexedSample
left cerebral cortex
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6356ADHE
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
414 MB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI5693YBRI
yaml
seqspec
seqspec of IGVFFI2185ZXQY, IGVFFI4373RWTV
Ali Mortazavi, UCI
1.1 KB
validated
Attribution
Award
HG012077
Principal Investigator(s)
Lior Pachter
,
Kim Green
,
Grant MacGregor
,
Ali Mortazavi
,
Barbara Wold
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI