{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI4373RWTV/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI4373RWTV",
"assay_titles": [
"Parse SPLiT-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping"
},
"content_md5sum": "3d77da1c3005350f3c13801009fc5fd3",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-08-25T21:56:16.917963+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS6946BUZB/",
"accession": "IGVFDS6946BUZB",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM9603DIDI/",
"accession": "IGVFSM9603DIDI",
"classifications": [
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"status": "released",
"summary": "Parse SPLiT-seq"
},
"file_size": 12304437794,
"flowcell_id": "AAC2L2NHV",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI4373RWTV/@@download/IGVFFI4373RWTV.fastq.gz",
"illumina_read_type": "R1",
"input_file_for": [
"/matrix-files/IGVFFI6356ADHE/",
"/matrix-files/IGVFFI2560RYCC/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"lane": 1,
"loci_list_for": [],
"maximum_read_length": 140,
"md5sum": "dc802213c02fe80066b5919e60dffb83",
"mean_read_length": 140,
"minimum_read_length": 140,
"read_count": 158630723,
"release_timestamp": "2024-05-08T23:38:39.456099+00:00",
"s3_uri": "s3://igvf-files/2023/08/25/062bc669-056f-446e-acee-fd170ba945d2/IGVFFI4373RWTV.fastq.gz",
"schema_version": "14",
"seqspecs": [
"/configuration-files/IGVFFI5693YBRI/"
],
"sequencing_kit": "NextSeq 1000/2000 P3 Reagent Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0010963/",
"status": "released",
"term_name": "Illumina NextSeq 2000"
},
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_file_name": "igvf_b01/next1/igvf_b01_B04_D_next_N1_R1.fastq.gz",
"summary": "R1 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "062bc669-056f-446e-acee-fd170ba945d2"
}