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IGVFFI4139VQCR

released
validated
File Set
IGVFDS6675BDQA(scATAC-seq)
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jay-shendure:scATAC_mEBs_rep1_day21_10XlaneB_I1
md5sum
68c8f077334d44358279a8199a7886e5
Content MD5sum
a67f01e67cdf66a9c3cce6aae6367772
File Size
798 MB
Submitted File Name
/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/scATAC_mEBs/scATAC_mEBs_d21_crispri_rep1_lane_b_I1_001.fastq.gz

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
1
Flowcell ID
H3JK7BGXG
Lane
1
Sequencing Kit
NextSeq 500/550 High-Output v2.5 Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
105803579

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneB), male, Mus musculus WD44

Files Derived From This File

7 items
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
87 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
202 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
53 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
71 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
126 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
120 MB
validated
bigWig
signal
GRCm39 filtered normalized unstranded signal
Jay Shendure, UW
77 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4139VQCR, IGVFFI7875UNHZ, IGVFFI3626JLET, IGVFFI9316OPTY
Jay Shendure, UW
854 B
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Jay Shendure, UW