IGVFFI4139VQCR

released
validated
{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI4139VQCR/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI4139VQCR",
    "aliases": [
        "jay-shendure:scATAC_mEBs_rep1_day21_10XlaneB_I1"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "a67f01e67cdf66a9c3cce6aae6367772",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2023-12-09T00:57:36.686781+00:00",
    "file_format": "fastq",
    "file_set": "/measurement-sets/IGVFDS6675BDQA/",
    "file_size": 797961967,
    "flowcell_id": "H3JK7BGXG",
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI4139VQCR/@@download/IGVFFI4139VQCR.fastq.gz",
    "illumina_read_type": "I1",
    "input_file_for": [
        "/signal-files/IGVFFI9468KRLQ/",
        "/signal-files/IGVFFI4530JOCA/",
        "/signal-files/IGVFFI4106YTGZ/",
        "/signal-files/IGVFFI6250RJNE/",
        "/signal-files/IGVFFI4871DVXE/",
        "/signal-files/IGVFFI8400FXRX/",
        "/signal-files/IGVFFI9916JAHE/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "lane": 1,
    "loci_list_for": [],
    "maximum_read_length": 8,
    "md5sum": "68c8f077334d44358279a8199a7886e5",
    "mean_read_length": 8,
    "minimum_read_length": 8,
    "read_count": 105803579,
    "release_timestamp": "2024-07-09T20:16:42.418900+00:00",
    "s3_uri": "s3://igvf-files/2023/12/09/ba84effb-6d86-480d-a572-b9ec0d9cdfb5/IGVFFI4139VQCR.fastq.gz",
    "schema_version": "14",
    "seqspecs": [
        "/configuration-files/IGVFFI0221JPNZ/"
    ],
    "sequencing_kit": "NextSeq 500/550 High-Output v2.5 Kit",
    "sequencing_platform": "/platform-terms/EFO_0009173/",
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_scATAC_EB_correction_nobackup/scATAC_mEBs/scATAC_mEBs_d21_crispri_rep1_lane_b_I1_001.fastq.gz",
    "summary": "I1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "ba84effb-6d86-480d-a572-b9ec0d9cdfb5"
}