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IGVFFI3029BTOF

released
validated
File Set
IGVFDS0534ALXE(quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
md5sum
cbdc32fff7d899da6fb3c5a6c9298997
Content MD5sum
8c44d5e837e7a65b08caf7ecd87ced92
File Size
738 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/TSTFI52658562DNA_rep3_R1.fastq.gz"

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
1
Sequencing Kit
NextSeq 500 Mid Output v2 Kit
Illumina Read Type
R1
Average Read Length
15
Read Count
34374251

Files Derived From This File

3 items
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
553 KB
validated
tsv
reporter genomic variant effects
reporter genomic variant effects
Nadav Ahituv, UCSF
121 KB
validated
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
543 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3029BTOF, IGVFFI8179RWIF, IGVFFI3151ROZD
Nadav Ahituv, UCSF
1.3 KB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF