IGVFFI3029BTOF

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI3029BTOF/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI3029BTOF",
    "assay_titles": [
        "lentiMPRA"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "content_md5sum": "8c44d5e837e7a65b08caf7ecd87ced92",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-03-19T14:59:29.597878+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/auxiliary-sets/IGVFDS0534ALXE/",
        "accession": "IGVFDS0534ALXE",
        "file_set_type": "quantification DNA barcode sequencing",
        "status": "released",
        "summary": "quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder"
    },
    "file_size": 738448776,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI3029BTOF/@@download/IGVFFI3029BTOF.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [
        "/tabular-files/IGVFFI3167QVNF/",
        "/tabular-files/IGVFFI7367TYXG/",
        "/tabular-files/IGVFFI6886KJDH/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/nadav-ahituv/",
        "title": "Nadav Ahituv, UCSF"
    },
    "loci_list_for": [],
    "maximum_read_length": 15,
    "md5sum": "cbdc32fff7d899da6fb3c5a6c9298997",
    "mean_read_length": 15,
    "minimum_read_length": 15,
    "read_count": 34374251,
    "read_names": [
        "Barcode forward"
    ],
    "release_timestamp": "2025-01-09T20:34:27.518715+00:00",
    "s3_uri": "s3://igvf-files/2024/03/19/4e10d552-50df-4086-b659-ae5a3eaf955a/IGVFFI3029BTOF.fastq.gz",
    "schema_version": "14",
    "seqspecs": [
        "/configuration-files/IGVFFI2352MWIR/"
    ],
    "sequencing_kit": "NextSeq 500 Mid Output v2 Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0009173/",
        "status": "released",
        "term_name": "Illumina NextSeq 500"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/696ac72c-9846-469d-8bf1-8bd01856d4ba/",
        "title": "Thorben Maass"
    },
    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/TSTFI52658562DNA_rep3_R1.fastq.gz\"",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "4e10d552-50df-4086-b659-ae5a3eaf955a"
}