Home

IGVFFI2283WTXS

released
validated
File Set
IGVFDS7500YTSB(Proliferation CRISPR base editing screen integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
daniel-bauer:ChrX_Screen_ABE8e_day7_rep3_read2
md5sum
2ba28902c737106bc6fa4dfac31e4cf4
Content MD5sum
7e438405caa74d9f320b5b25cdb663c5
File Size
126 MB
Submitted File Name
/data/pinello/PROJECTS/2024_02_EC_ChrX/submitted_files/ChrX_Screen_1_#ACGTAgat_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R2
Index
ACGTAgat
Average Read Length
150
Read Count
2957115

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
guide quantifications
guide quantifications
Daniel Bauer, HSCI
345 KB
validated

Attribution

Award
HG012010
Principal Investigator(s)
Contact P.I.
Luca Pinello
Lab
Daniel Bauer, HSCI